| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is yicG [C]
Identifier: 120598157
GI number: 120598157
Start: 1514387
End: 1515040
Strand: Direct
Name: yicG [C]
Synonym: Sputw3181_1334
Alternate gene names: 120598157
Gene position: 1514387-1515040 (Clockwise)
Preceding gene: 120598156
Following gene: 120598161
Centisome position: 32.16
GC content: 42.81
Gene sequence:
>654_bases ATGACCGTTGAAATGCAAGAAACACAATTTATTGGATTACTATGGCTTGTTGGTATTCTTGCTGAAGCGATGACGGGGGC CTTGGCAGCTGGGCGAAAGCAGATGGATTTGTTTGGGGTTGTGATCATTGGCTGTGCAACGGCAATTGGTGGCGGTACCC TAAGAGATATGATGTTAGGAAACTATCCCCTGATCTGGGTTGAGAATGTACATTATCTTCTCGCCATAGCATTTGCGTCT TTATTGACGGTCGCCATCGCGCCTGTGATGCGCTATTTGTCTAAACTTTTTCTTGCTATAGATGCTTTAGGGCTTGCCGT ATTTTCAATTGTTGGGGCACAGAAAACGTTAATGTTGGGATTTAGTCCCACAATTGCGGTTGTGATGGGGTTGGTTACAG GTGTATTTGGTGGCGTAATTCGCGATATTTTGTGCAATCAAGTACCTTTGATTTTTAAGAAGGAACTTTATGCCGTTATT TCACTTTTAACAGCTGGATTATATATTACCCTCAAAGCCTACCAGTTGACGGAATGGATTAACCTTGTGATTTGCCTTAG TATCGGCTTTAGTTTGCGGATGTTGGCGCTACGATACCATTGGTCAATGCCTACATTTGATTATCAAGCAAACAGTGATC AACAGTCCCACTAA
Upstream 100 bases:
>100_bases CACGTTTTATTATCTATTATTTTTTCTAATGATAACTTCAAAATTAAATCATTACATAACTTGAGTTTTATCAGGCAGAA TCTGCTTCTTTTTACTGTAA
Downstream 100 bases:
>100_bases ATTTAAGAAGCAGGGAAGGCAAACTCCCTGCTTTTTTACTTTGGTGCTTACTGTTGGTTTTGGAGCGTTTTTAACGCTTC GAGTGCGGCATCATAGTTAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 217; Mature: 216
Protein sequence:
>217_residues MTVEMQETQFIGLLWLVGILAEAMTGALAAGRKQMDLFGVVIIGCATAIGGGTLRDMMLGNYPLIWVENVHYLLAIAFAS LLTVAIAPVMRYLSKLFLAIDALGLAVFSIVGAQKTLMLGFSPTIAVVMGLVTGVFGGVIRDILCNQVPLIFKKELYAVI SLLTAGLYITLKAYQLTEWINLVICLSIGFSLRMLALRYHWSMPTFDYQANSDQQSH
Sequences:
>Translated_217_residues MTVEMQETQFIGLLWLVGILAEAMTGALAAGRKQMDLFGVVIIGCATAIGGGTLRDMMLGNYPLIWVENVHYLLAIAFAS LLTVAIAPVMRYLSKLFLAIDALGLAVFSIVGAQKTLMLGFSPTIAVVMGLVTGVFGGVIRDILCNQVPLIFKKELYAVI SLLTAGLYITLKAYQLTEWINLVICLSIGFSLRMLALRYHWSMPTFDYQANSDQQSH >Mature_216_residues TVEMQETQFIGLLWLVGILAEAMTGALAAGRKQMDLFGVVIIGCATAIGGGTLRDMMLGNYPLIWVENVHYLLAIAFASL LTVAIAPVMRYLSKLFLAIDALGLAVFSIVGAQKTLMLGFSPTIAVVMGLVTGVFGGVIRDILCNQVPLIFKKELYAVIS LLTAGLYITLKAYQLTEWINLVICLSIGFSLRMLALRYHWSMPTFDYQANSDQQSH
Specific function: Unknown
COG id: COG2860
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0126 family [H]
Homologues:
Organism=Escherichia coli, GI87082304, Length=197, Percent_Identity=55.3299492385787, Blast_Score=207, Evalue=5e-55, Organism=Escherichia coli, GI1786352, Length=202, Percent_Identity=38.1188118811881, Blast_Score=111, Evalue=5e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005115 [H]
Pfam domain/function: PF03458 UPF0126 [H]
EC number: NA
Molecular weight: Translated: 23700; Mature: 23569
Theoretical pI: Translated: 7.43; Mature: 7.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 5.1 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVEMQETQFIGLLWLVGILAEAMTGALAAGRKQMDLFGVVIIGCATAIGGGTLRDMMLG CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHC NYPLIWVENVHYLLAIAFASLLTVAIAPVMRYLSKLFLAIDALGLAVFSIVGAQKTLMLG CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEC FSPTIAVVMGLVTGVFGGVIRDILCNQVPLIFKKELYAVISLLTAGLYITLKAYQLTEWI CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NLVICLSIGFSLRMLALRYHWSMPTFDYQANSDQQSH HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure TVEMQETQFIGLLWLVGILAEAMTGALAAGRKQMDLFGVVIIGCATAIGGGTLRDMMLG CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHC NYPLIWVENVHYLLAIAFASLLTVAIAPVMRYLSKLFLAIDALGLAVFSIVGAQKTLMLG CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEC FSPTIAVVMGLVTGVFGGVIRDILCNQVPLIFKKELYAVISLLTAGLYITLKAYQLTEWI CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NLVICLSIGFSLRMLALRYHWSMPTFDYQANSDQQSH HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]