| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is hemH2 [H]
Identifier: 120598151
GI number: 120598151
Start: 1510300
End: 1511313
Strand: Direct
Name: hemH2 [H]
Synonym: Sputw3181_1328
Alternate gene names: 120598151
Gene position: 1510300-1511313 (Clockwise)
Preceding gene: 120598150
Following gene: 120598156
Centisome position: 32.08
GC content: 41.32
Gene sequence:
>1014_bases TTGGCTAAATTTTCAGGATTATCAAAAGACATTGGGCATGCAAAGCGCGGCAGGGTTGGTGTACTGTTACTTAATCTGGG TACACCAGATGCTCCAACAGCATCGGCAGTAAGACGTTATTTAGCTGAGTTTTTATCCGATCCTCGTGTAGTAGAAATTC CTAAATTAATTTGGATGTTAATTTTACATGGGATTATTTTGCGAGTTCGTCCGGCTAAATCGGCGGCTCTATACGAAAAA GTATGGACCCAAGCGGGTTCGCCTTTAATGGATATCAGTTTGCGCCAAACGGCAAAACTTACGGATAAGCTAGCATCTGA GGGAATAGATGTATCTGTGCATTTAGCCATGCGTTATGGAAATCCTTCGGTTGCCAGCACATTGCAAAATATGCACAAGC AAGGGGTTGATAAGATTGTTGTATTGCCTTTGTATCCTCAATATGCGGCGCCGACGACAGGCTCTGCTTTTGATGCGATA GCAAAAGAGTTATCCCAATGGCGTTATATTCCATCACTTCATTTTATTAATACTTATCATGACCATCCCGATTTTATTGA GGCTTTAGCTGAGTCAATTCGAGTTGATTTTGAAAATCAAGGCAAGCCTGAAAAGCTGGTATTGTCATACCATGGTATGC CAGAAAGGAACTTGCATTTAGGTGATCCTTATTATTGTTTTTGTGCAAAAACTACACGCTTAGTAACTGAAAAGCTTGGA TTAAGTCAGGATGAGTTTGTGATGACTTTTCAATCTCGCTTTGGTAAAGCTAAATGGCTACAACCTTACACCGATGCCAC GATGCAAGCATTACCCAATGCGGGTGTTCGTGATGTTGCTATTGTCTGTCCGGCATTTAGTGCCGATTGCCTCGAAACAT TAGAAGAAATTGTTGGTGAAAATGGCCATATTTTTACCGAGGCAGGAGGGAATAAGTTCCGTTATATTCCGGCACTTAAC GATGATGATGCACACATTACTATGATGGCAAATCTTGTCAGGCCTTACTTATAA
Upstream 100 bases:
>100_bases AGCAGTTCAATTCAAAAGTGAAACCCGATAGTGCCGAACTTAAACAGGCTATTGAATCGGTTCTTTAATTTTAATACGTT AAATTATTTAAGAGGCTGTT
Downstream 100 bases:
>100_bases CCTGACGTAGCTTAGCCCTATGAAAATAAAAAAGGATAAGGCAACTTATCCTTTTTTAGATCTAGCGACCAAATTGGTTT TCGAAATAGCTTTCTATGAT
Product: ferrochelatase
Products: NA
Alternate protein names: Heme synthase 2; Protoheme ferro-lyase 2 [H]
Number of amino acids: Translated: 337; Mature: 336
Protein sequence:
>337_residues MAKFSGLSKDIGHAKRGRVGVLLLNLGTPDAPTASAVRRYLAEFLSDPRVVEIPKLIWMLILHGIILRVRPAKSAALYEK VWTQAGSPLMDISLRQTAKLTDKLASEGIDVSVHLAMRYGNPSVASTLQNMHKQGVDKIVVLPLYPQYAAPTTGSAFDAI AKELSQWRYIPSLHFINTYHDHPDFIEALAESIRVDFENQGKPEKLVLSYHGMPERNLHLGDPYYCFCAKTTRLVTEKLG LSQDEFVMTFQSRFGKAKWLQPYTDATMQALPNAGVRDVAIVCPAFSADCLETLEEIVGENGHIFTEAGGNKFRYIPALN DDDAHITMMANLVRPYL
Sequences:
>Translated_337_residues MAKFSGLSKDIGHAKRGRVGVLLLNLGTPDAPTASAVRRYLAEFLSDPRVVEIPKLIWMLILHGIILRVRPAKSAALYEK VWTQAGSPLMDISLRQTAKLTDKLASEGIDVSVHLAMRYGNPSVASTLQNMHKQGVDKIVVLPLYPQYAAPTTGSAFDAI AKELSQWRYIPSLHFINTYHDHPDFIEALAESIRVDFENQGKPEKLVLSYHGMPERNLHLGDPYYCFCAKTTRLVTEKLG LSQDEFVMTFQSRFGKAKWLQPYTDATMQALPNAGVRDVAIVCPAFSADCLETLEEIVGENGHIFTEAGGNKFRYIPALN DDDAHITMMANLVRPYL >Mature_336_residues AKFSGLSKDIGHAKRGRVGVLLLNLGTPDAPTASAVRRYLAEFLSDPRVVEIPKLIWMLILHGIILRVRPAKSAALYEKV WTQAGSPLMDISLRQTAKLTDKLASEGIDVSVHLAMRYGNPSVASTLQNMHKQGVDKIVVLPLYPQYAAPTTGSAFDAIA KELSQWRYIPSLHFINTYHDHPDFIEALAESIRVDFENQGKPEKLVLSYHGMPERNLHLGDPYYCFCAKTTRLVTEKLGL SQDEFVMTFQSRFGKAKWLQPYTDATMQALPNAGVRDVAIVCPAFSADCLETLEEIVGENGHIFTEAGGNKFRYIPALND DDAHITMMANLVRPYL
Specific function: Catalyzes the ferrous insertion into protoporphyrin IX [H]
COG id: COG0276
COG function: function code H; Protoheme ferro-lyase (ferrochelatase)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ferrochelatase family [H]
Homologues:
Organism=Homo sapiens, GI60499021, Length=335, Percent_Identity=25.6716417910448, Blast_Score=108, Evalue=9e-24, Organism=Homo sapiens, GI60499025, Length=333, Percent_Identity=25.8258258258258, Blast_Score=108, Evalue=1e-23, Organism=Escherichia coli, GI1786681, Length=322, Percent_Identity=48.1366459627329, Blast_Score=309, Evalue=2e-85, Organism=Saccharomyces cerevisiae, GI6324750, Length=338, Percent_Identity=26.6272189349112, Blast_Score=101, Evalue=1e-22, Organism=Drosophila melanogaster, GI17864156, Length=348, Percent_Identity=24.1379310344828, Blast_Score=103, Evalue=2e-22, Organism=Drosophila melanogaster, GI24651774, Length=277, Percent_Identity=23.826714801444, Blast_Score=85, Evalue=6e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001015 - InterPro: IPR019772 [H]
Pfam domain/function: PF00762 Ferrochelatase [H]
EC number: =4.99.1.1 [H]
Molecular weight: Translated: 37518; Mature: 37386
Theoretical pI: Translated: 7.36; Mature: 7.36
Prosite motif: PS00534 FERROCHELATASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKFSGLSKDIGHAKRGRVGVLLLNLGTPDAPTASAVRRYLAEFLSDPRVVEIPKLIWML CCCCCCCCHHHCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEHHHHHHHHH ILHGIILRVRPAKSAALYEKVWTQAGSPLMDISLRQTAKLTDKLASEGIDVSVHLAMRYG HHHHHHEEECCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHCCCCEEEEEEEEEC NPSVASTLQNMHKQGVDKIVVLPLYPQYAAPTTGSAFDAIAKELSQWRYIPSLHFINTYH CCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCC DHPDFIEALAESIRVDFENQGKPEKLVLSYHGMPERNLHLGDPYYCFCAKTTRLVTEKLG CCHHHHHHHHHHHEECCCCCCCCCEEEEEECCCCCCCEECCCCEEEEECHHHHHHHHHHC LSQDEFVMTFQSRFGKAKWLQPYTDATMQALPNAGVRDVAIVCPAFSADCLETLEEIVGE CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCC NGHIFTEAGGNKFRYIPALNDDDAHITMMANLVRPYL CCEEEEECCCCEEEEECCCCCCCCHHHHHHHHHCCCC >Mature Secondary Structure AKFSGLSKDIGHAKRGRVGVLLLNLGTPDAPTASAVRRYLAEFLSDPRVVEIPKLIWML CCCCCCCHHHCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEHHHHHHHHH ILHGIILRVRPAKSAALYEKVWTQAGSPLMDISLRQTAKLTDKLASEGIDVSVHLAMRYG HHHHHHEEECCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHCCCCEEEEEEEEEC NPSVASTLQNMHKQGVDKIVVLPLYPQYAAPTTGSAFDAIAKELSQWRYIPSLHFINTYH CCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCC DHPDFIEALAESIRVDFENQGKPEKLVLSYHGMPERNLHLGDPYYCFCAKTTRLVTEKLG CCHHHHHHHHHHHEECCCCCCCCCEEEEEECCCCCCCEECCCCEEEEECHHHHHHHHHHC LSQDEFVMTFQSRFGKAKWLQPYTDATMQALPNAGVRDVAIVCPAFSADCLETLEEIVGE CCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHCC NGHIFTEAGGNKFRYIPALNDDDAHITMMANLVRPYL CCEEEEECCCCEEEEECCCCCCCCHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12368813 [H]