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The map label for this gene is ynfA [C]

Identifier: 120597995

GI number: 120597995

Start: 1322696

End: 1323022

Strand: Direct

Name: ynfA [C]

Synonym: Sputw3181_1172

Alternate gene names: 120597995

Gene position: 1322696-1323022 (Clockwise)

Preceding gene: 120597994

Following gene: 120597996

Centisome position: 28.09

GC content: 48.62

Gene sequence:

>327_bases
GTGACCGTCATTACAACGTTAGGTTTATTTATCATTACTGCAATAGCAGAAATTGTCGGTTGCTATTTGCCTTACTTGTG
GCTGAAAAAAGGAGCTTCAGCCTGGGTGCTGTTACCTGCTGCAATCAGTCTGGCATTATTTGCCTGGTTGTTAACGCTTC
ACCCAACGGCTGCTGGACGTGTTTACGCGGCTTATGGCGGAGTATACGTAACAATAGCAATAGTCTGGTTGTGGGGAGTA
GATGGCATTCAACCACACCGCTGGGATCTGGCTGGCGTGGTGCTAATGCTCGCAGGCATGGCAGTGATCATGTTTGCGCC
GAGATAA

Upstream 100 bases:

>100_bases
GCTAACGCATTGGAGCAGTTTGATTTAGCACATACCACGATAGAGCTGGAGTTAACACAAGAACATTGTCGGGATGAATT
CCCGGATAAGGTGCAGTGAA

Downstream 100 bases:

>100_bases
ACAATTTGTTTTGAGCACGGTATTACGAAAAGAAAGACTTAGGTACTTTTATCATTTATAGCAATGGTTTTTCTGTTCTT
GATTAAGAATTTTTCAGAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 108; Mature: 107

Protein sequence:

>108_residues
MTVITTLGLFIITAIAEIVGCYLPYLWLKKGASAWVLLPAAISLALFAWLLTLHPTAAGRVYAAYGGVYVTIAIVWLWGV
DGIQPHRWDLAGVVLMLAGMAVIMFAPR

Sequences:

>Translated_108_residues
MTVITTLGLFIITAIAEIVGCYLPYLWLKKGASAWVLLPAAISLALFAWLLTLHPTAAGRVYAAYGGVYVTIAIVWLWGV
DGIQPHRWDLAGVVLMLAGMAVIMFAPR
>Mature_107_residues
TVITTLGLFIITAIAEIVGCYLPYLWLKKGASAWVLLPAAISLALFAWLLTLHPTAAGRVYAAYGGVYVTIAIVWLWGVD
GIQPHRWDLAGVVLMLAGMAVIMFAPR

Specific function: Unknown

COG id: COG1742

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0060 family

Homologues:

Organism=Escherichia coli, GI1787865, Length=102, Percent_Identity=59.8039215686275, Blast_Score=120, Evalue=3e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1172_SHESW (A1RH70)

Other databases:

- EMBL:   CP000503
- RefSeq:   YP_962569.1
- STRING:   A1RH70
- GeneID:   4659999
- GenomeReviews:   CP000503_GR
- KEGG:   shw:Sputw3181_1172
- eggNOG:   COG1742
- HOGENOM:   HBG313568
- OMA:   TRWDVAG
- ProtClustDB:   CLSK852030
- HAMAP:   MF_00010
- InterPro:   IPR003844

Pfam domain/function: PF02694 UPF0060

EC number: NA

Molecular weight: Translated: 11686; Mature: 11555

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xd94f878)-; HASH(0xdbbf390)-; HASH(0xb201f1c)-; HASH(0xf312c90)-;

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVITTLGLFIITAIAEIVGCYLPYLWLKKGASAWVLLPAAISLALFAWLLTLHPTAAGR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCE
VYAAYGGVYVTIAIVWLWGVDGIQPHRWDLAGVVLMLAGMAVIMFAPR
EEHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCH
>Mature Secondary Structure 
TVITTLGLFIITAIAEIVGCYLPYLWLKKGASAWVLLPAAISLALFAWLLTLHPTAAGR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCE
VYAAYGGVYVTIAIVWLWGVDGIQPHRWDLAGVVLMLAGMAVIMFAPR
EEHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA