| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597979
Identifier: 120597979
GI number: 120597979
Start: 1306649
End: 1307416
Strand: Direct
Name: 120597979
Synonym: Sputw3181_1156
Alternate gene names: NA
Gene position: 1306649-1307416 (Clockwise)
Preceding gene: 120597978
Following gene: 120597980
Centisome position: 27.75
GC content: 46.61
Gene sequence:
>768_bases ATGATGGAAAAGTGCTTTGCTCTTTACCGTTACAGTCATTCTGATGGGACAGCCAAAGAATGGGCCATTTACGTTGGATC AAATACCCAGGAGATTGAAGTCCGGTTTGGAAAAGCTGGTCAATTGTCGCAGCAGCGATTGATTGACTCGACTGATCCTA ACGCAGAAGCAGACCGAAGAATCAATGAGAAAATCAACAAGGGTTATCGATTTGTTGGACAAGTCGGCATTGATCATCAA GGGCGGCCATTTGAACTCTCAAATGCGCTTGATAGCGTCGCGTGCGCCAATAACGTCAGTTGGGAGTTTCGTACTCGCAA GGACGTCAATGGCCAAATCTCGCTGGCGCAAAAAGCGTTATTCGATATGGCAAAGCTGCTTGAAGCCTATGGCTTGGCTG TTATTGATGATAACCAGGTCAGGATTGGAGAATGGTCATTAGGGTTTTGCAAAAGCGGATTACCTAGTACCAATCAAATC AGCATTGTGTCAGGTGAAGGCGCTGGCATTGTTAACACTGATGATGGCCCGTGGCCGTTGTTGCTGTTACTGGCCTTTAA GCGTCAATTACCACCACTGTGTTCGCTCACAGTAGCGAGTCCTGAGGGGATAGAAGTATCCGACCAACTGAAGTTGGAAA AAGATGTATTGAGGCTTTTAGGCAGTGATTTAGAGCGGGTTCGCCCGATAGCTGAAGCACTGGACTTAATGCCTGCGAAA ATCGATCTCAACCAATCGTCGCCTGATTCGCAAAATTACTATTTCTGA
Upstream 100 bases:
>100_bases ATGCACTGGTTCGGTCTTTGACGGCTCGTGCTGAGTTGGAGCAACGTGAAGCCATTCACCGTATTGCCGCTGATGTCTTC GGTGACCACTGGGAGGATTG
Downstream 100 bases:
>100_bases TAGTGATATTGCCATTAGCGCGTCAACTACTACCACCCAAACGGGGGGCCATTGCTCCTGTTGGGAGTGGTGCGTCCCCA TCTCGCATGAGGATGCACTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 255; Mature: 255
Protein sequence:
>255_residues MMEKCFALYRYSHSDGTAKEWAIYVGSNTQEIEVRFGKAGQLSQQRLIDSTDPNAEADRRINEKINKGYRFVGQVGIDHQ GRPFELSNALDSVACANNVSWEFRTRKDVNGQISLAQKALFDMAKLLEAYGLAVIDDNQVRIGEWSLGFCKSGLPSTNQI SIVSGEGAGIVNTDDGPWPLLLLLAFKRQLPPLCSLTVASPEGIEVSDQLKLEKDVLRLLGSDLERVRPIAEALDLMPAK IDLNQSSPDSQNYYF
Sequences:
>Translated_255_residues MMEKCFALYRYSHSDGTAKEWAIYVGSNTQEIEVRFGKAGQLSQQRLIDSTDPNAEADRRINEKINKGYRFVGQVGIDHQ GRPFELSNALDSVACANNVSWEFRTRKDVNGQISLAQKALFDMAKLLEAYGLAVIDDNQVRIGEWSLGFCKSGLPSTNQI SIVSGEGAGIVNTDDGPWPLLLLLAFKRQLPPLCSLTVASPEGIEVSDQLKLEKDVLRLLGSDLERVRPIAEALDLMPAK IDLNQSSPDSQNYYF >Mature_255_residues MMEKCFALYRYSHSDGTAKEWAIYVGSNTQEIEVRFGKAGQLSQQRLIDSTDPNAEADRRINEKINKGYRFVGQVGIDHQ GRPFELSNALDSVACANNVSWEFRTRKDVNGQISLAQKALFDMAKLLEAYGLAVIDDNQVRIGEWSLGFCKSGLPSTNQI SIVSGEGAGIVNTDDGPWPLLLLLAFKRQLPPLCSLTVASPEGIEVSDQLKLEKDVLRLLGSDLERVRPIAEALDLMPAK IDLNQSSPDSQNYYF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28285; Mature: 28285
Theoretical pI: Translated: 4.77; Mature: 4.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMEKCFALYRYSHSDGTAKEWAIYVGSNTQEIEVRFGKAGQLSQQRLIDSTDPNAEADRR CCHHHEEHHEECCCCCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHCCCCCCCCHHHHH INEKINKGYRFVGQVGIDHQGRPFELSNALDSVACANNVSWEFRTRKDVNGQISLAQKAL HHHHHHCCCEEEEEECCCCCCCCEEHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHH FDMAKLLEAYGLAVIDDNQVRIGEWSLGFCKSGLPSTNQISIVSGEGAGIVNTDDGPWPL HHHHHHHHHHCEEEEECCCEEEECCCCHHHHCCCCCCCEEEEEECCCCEEEECCCCCHHH LLLLAFKRQLPPLCSLTVASPEGIEVSDQLKLEKDVLRLLGSDLERVRPIAEALDLMPAK HHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE IDLNQSSPDSQNYYF EECCCCCCCCCCCCC >Mature Secondary Structure MMEKCFALYRYSHSDGTAKEWAIYVGSNTQEIEVRFGKAGQLSQQRLIDSTDPNAEADRR CCHHHEEHHEECCCCCCCEEEEEEECCCCEEEEEEECCCCCCHHHHHCCCCCCCCHHHHH INEKINKGYRFVGQVGIDHQGRPFELSNALDSVACANNVSWEFRTRKDVNGQISLAQKAL HHHHHHCCCEEEEEECCCCCCCCEEHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHH FDMAKLLEAYGLAVIDDNQVRIGEWSLGFCKSGLPSTNQISIVSGEGAGIVNTDDGPWPL HHHHHHHHHHCEEEEECCCEEEECCCCHHHHCCCCCCCEEEEEECCCCEEEECCCCCHHH LLLLAFKRQLPPLCSLTVASPEGIEVSDQLKLEKDVLRLLGSDLERVRPIAEALDLMPAK HHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE IDLNQSSPDSQNYYF EECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA