Definition Shewanella sp. W3-18-1 chromosome, complete genome.
Accession NC_008750
Length 4,708,380

Click here to switch to the map view.

The map label for this gene is 120597938

Identifier: 120597938

GI number: 120597938

Start: 1257303

End: 1257953

Strand: Direct

Name: 120597938

Synonym: Sputw3181_1108

Alternate gene names: NA

Gene position: 1257303-1257953 (Clockwise)

Preceding gene: 120597937

Following gene: 120597939

Centisome position: 26.7

GC content: 48.54

Gene sequence:

>651_bases
ATGAAAAAATCCTGCATGTTGCTAACCGATCGAAGTCCGTTTCAGACAATAAGATGTGTATCCAGAGGAGAGTTAACCAT
GACGACATCAATGCAGAACAACCCAAAGCACCAGTCAAAACAGTGGTCTAAAGCTGGATTACTTTTATTGGCAGTCGGCT
CAACCTTATTGTCTGGCTGTAGTTCATTGGGTCTTGGGAGTAGTGAATATGGATGCCCAGGTATGCCTGACGGTGTGCGC
TGTTTATCTGCTCGTGAAGTCTATGAGCTTACCAGTTATGGCGCTGCACCCAAGACGATTGATGCTGTGGCGACTCGAAT
TGGTTCTCCCTCTGGGTATTCACAATCTGATTTAGAGACAGGACTGCTGAGCCATCCAGCATTACCCGAGACGCAGCAAT
CTGCACCTATTCGCATTCCTTCAAGGGTAATGCGGATTTGGATTGCGCCTTGGGAGGATGACCGTGGAGATCTGAATTTA
TCCAGCTACGTGTTTACCGAAATTGAACCGCGCCGGTGGGATATTGGGGTGTCAGCACCTCGAACGGTTTCGCCAGTGCT
ACGTCCACTTCAGACTCAAAGCGATTCAGCCTCAGCGGGAGCTGATGGTAAGCGCGATAACTTGAGTATCTACGGAGAAA
CTAACGAATGA

Upstream 100 bases:

>100_bases
TCCCAGTCATAGAGGTAGACGCTGCAAGGAAAATTGAAGTCATAGTCACTCGTGGTGCCTCGTTGTCGTTGGCCACTTCT
CAAGGGGGTGGTGCAAGAAG

Downstream 100 bases:

>100_bases
CAAATGCAGTTCGCAGCATTCAGACTCAGCGCCTAATGACCATTGGTGCGCTTGGTTTAATGGCGTTAATGATTTCGGAG
CCCTCATTTGCAGGCACCGG

Product: hypothetical protein

Products: NA

Alternate protein names: Pilus Biogenesis Protein; Pilus Assembly Protein; Sex Pilus Assembly Protein; Plasmid-Related Protein; Membrane Lipoprotein Lipid Attachment Site

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MKKSCMLLTDRSPFQTIRCVSRGELTMTTSMQNNPKHQSKQWSKAGLLLLAVGSTLLSGCSSLGLGSSEYGCPGMPDGVR
CLSAREVYELTSYGAAPKTIDAVATRIGSPSGYSQSDLETGLLSHPALPETQQSAPIRIPSRVMRIWIAPWEDDRGDLNL
SSYVFTEIEPRRWDIGVSAPRTVSPVLRPLQTQSDSASAGADGKRDNLSIYGETNE

Sequences:

>Translated_216_residues
MKKSCMLLTDRSPFQTIRCVSRGELTMTTSMQNNPKHQSKQWSKAGLLLLAVGSTLLSGCSSLGLGSSEYGCPGMPDGVR
CLSAREVYELTSYGAAPKTIDAVATRIGSPSGYSQSDLETGLLSHPALPETQQSAPIRIPSRVMRIWIAPWEDDRGDLNL
SSYVFTEIEPRRWDIGVSAPRTVSPVLRPLQTQSDSASAGADGKRDNLSIYGETNE
>Mature_216_residues
MKKSCMLLTDRSPFQTIRCVSRGELTMTTSMQNNPKHQSKQWSKAGLLLLAVGSTLLSGCSSLGLGSSEYGCPGMPDGVR
CLSAREVYELTSYGAAPKTIDAVATRIGSPSGYSQSDLETGLLSHPALPETQQSAPIRIPSRVMRIWIAPWEDDRGDLNL
SSYVFTEIEPRRWDIGVSAPRTVSPVLRPLQTQSDSASAGADGKRDNLSIYGETNE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23397; Mature: 23397

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSCMLLTDRSPFQTIRCVSRGELTMTTSMQNNPKHQSKQWSKAGLLLLAVGSTLLSGC
CCCCEEEEECCCHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCEEEEHHHHHHHHHH
SSLGLGSSEYGCPGMPDGVRCLSAREVYELTSYGAAPKTIDAVATRIGSPSGYSQSDLET
HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHH
GLLSHPALPETQQSAPIRIPSRVMRIWIAPWEDDRGDLNLSSYVFTEIEPRRWDIGVSAP
HHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCEEECCCCCC
RTVSPVLRPLQTQSDSASAGADGKRDNLSIYGETNE
CHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCC
>Mature Secondary Structure
MKKSCMLLTDRSPFQTIRCVSRGELTMTTSMQNNPKHQSKQWSKAGLLLLAVGSTLLSGC
CCCCEEEEECCCHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCEEEEHHHHHHHHHH
SSLGLGSSEYGCPGMPDGVRCLSAREVYELTSYGAAPKTIDAVATRIGSPSGYSQSDLET
HHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHH
GLLSHPALPETQQSAPIRIPSRVMRIWIAPWEDDRGDLNLSSYVFTEIEPRRWDIGVSAP
HHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEECCCCEEECCCCCC
RTVSPVLRPLQTQSDSASAGADGKRDNLSIYGETNE
CHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA