| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597931
Identifier: 120597931
GI number: 120597931
Start: 1252692
End: 1253327
Strand: Direct
Name: 120597931
Synonym: Sputw3181_1101
Alternate gene names: NA
Gene position: 1252692-1253327 (Clockwise)
Preceding gene: 120597930
Following gene: 120597934
Centisome position: 26.61
GC content: 47.96
Gene sequence:
>636_bases ATGAGCAAGCATAAGTCCGTTTGGCTGCTGTGTCTGGCACTGATGCTGGAGATTATTGCCATTGGCGTGTTAGTGCCCGG TGATTGGACTGGCCGGGTCATCAGTAAAGAGAAGCAGATGATCCAAAACCAATTGGGCGCACAAACAAGCTATTGGATTG GTCAAACTAGCCATCGCTGGTATCAGTCATGGATTGTGGATACGCAGATGGAGCAATCTGTGCGTGATTTTCTAATCCCC ACTGAAGAACAGCGACTTCGTTCTAAAGGGATGGAGAACATGGGAGGCTTTTGGTTTGTGTGGGTAGAAGACCGTATTCA GGCATTTTTTGATGTGCTGTACCAAGTGTTCACTCGATTTGCGTTGCTGATGGTCTGGTTGCCCTTTGCGCTTATTCTCA TGTTGCCGGCGTTGTGGGATGGCTTAATGACCTGGAAGATTAAGAAGACAACATTTGATTTTTCGAGCCCTATCATTCAC CGCTACAGCATGATTATCCTGGGCTCAGGTGTCATTTTGCTGTTTATGGGATTGTTCGCCCCACTGGCTATTCCACCGGT GGTGTTACCGTCGCTGATCATCGGTTTGGCATTGATGGCGGGGTTGGCGTTAAGTCACTTGCAGAAGAAGATATGA
Upstream 100 bases:
>100_bases GACCATACATCGACAAAGCGGCTTCAGCAAGTGATTAAAGCTCGGATTATGACGCCAACCGTTGCAGCCATGCTGGCGCG AGTAGAAGAGGATGTTTGGC
Downstream 100 bases:
>100_bases GGCCCATCAGGCCTCATCTTGTAGAGCTAAAACCTTACGCCTACGGTATTGCCGTTCTCGTCTTCAGCAGGCAAATGGTA AGTATCAATAAGGTGGCCTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 211; Mature: 210
Protein sequence:
>211_residues MSKHKSVWLLCLALMLEIIAIGVLVPGDWTGRVISKEKQMIQNQLGAQTSYWIGQTSHRWYQSWIVDTQMEQSVRDFLIP TEEQRLRSKGMENMGGFWFVWVEDRIQAFFDVLYQVFTRFALLMVWLPFALILMLPALWDGLMTWKIKKTTFDFSSPIIH RYSMIILGSGVILLFMGLFAPLAIPPVVLPSLIIGLALMAGLALSHLQKKI
Sequences:
>Translated_211_residues MSKHKSVWLLCLALMLEIIAIGVLVPGDWTGRVISKEKQMIQNQLGAQTSYWIGQTSHRWYQSWIVDTQMEQSVRDFLIP TEEQRLRSKGMENMGGFWFVWVEDRIQAFFDVLYQVFTRFALLMVWLPFALILMLPALWDGLMTWKIKKTTFDFSSPIIH RYSMIILGSGVILLFMGLFAPLAIPPVVLPSLIIGLALMAGLALSHLQKKI >Mature_210_residues SKHKSVWLLCLALMLEIIAIGVLVPGDWTGRVISKEKQMIQNQLGAQTSYWIGQTSHRWYQSWIVDTQMEQSVRDFLIPT EEQRLRSKGMENMGGFWFVWVEDRIQAFFDVLYQVFTRFALLMVWLPFALILMLPALWDGLMTWKIKKTTFDFSSPIIHR YSMIILGSGVILLFMGLFAPLAIPPVVLPSLIIGLALMAGLALSHLQKKI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24232; Mature: 24101
Theoretical pI: Translated: 9.76; Mature: 9.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 5.7 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 5.2 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKHKSVWLLCLALMLEIIAIGVLVPGDWTGRVISKEKQMIQNQLGAQTSYWIGQTSHRW CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHHH YQSWIVDTQMEQSVRDFLIPTEEQRLRSKGMENMGGFWFVWVEDRIQAFFDVLYQVFTRF HHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHCCCEEEEEHHHHHHHHHHHHHHHHHHH ALLMVWLPFALILMLPALWDGLMTWKIKKTTFDFSSPIIHRYSMIILGSGVILLFMGLFA HHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHH PLAIPPVVLPSLIIGLALMAGLALSHLQKKI HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SKHKSVWLLCLALMLEIIAIGVLVPGDWTGRVISKEKQMIQNQLGAQTSYWIGQTSHRW CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHHH YQSWIVDTQMEQSVRDFLIPTEEQRLRSKGMENMGGFWFVWVEDRIQAFFDVLYQVFTRF HHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHCCCEEEEEHHHHHHHHHHHHHHHHHHH ALLMVWLPFALILMLPALWDGLMTWKIKKTTFDFSSPIIHRYSMIILGSGVILLFMGLFA HHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHH PLAIPPVVLPSLIIGLALMAGLALSHLQKKI HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA