| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597929
Identifier: 120597929
GI number: 120597929
Start: 1250312
End: 1252135
Strand: Direct
Name: 120597929
Synonym: Sputw3181_1099
Alternate gene names: NA
Gene position: 1250312-1252135 (Clockwise)
Preceding gene: 120597928
Following gene: 120597930
Centisome position: 26.56
GC content: 49.84
Gene sequence:
>1824_bases ATGAAAGAAAACGCATACGAAATGCCCTGGCGCACGAACTATGAGGCCATGGCAGCAGCAGGTTGGCTGGTGGTTGGGGC CACTGGGGCGATTGCCGCAGAAATGCTGACTGAGCTACCACCTGAGCCATTTTGGTGGATGACAGGGATTTCCTCGGGCA TGGCGTTGTATCGCCTGCCTGAGGCTTACCGTCTTTATAAGTTGCAGAAGGGGCTAAAAGGCAAACCATTGGCATTTATG GCGCTGTCGCATTTGCAAAAGGTAATGGCAAAACATCCTGATGAATTGTGGTTAGGTTATGGCTTTGAGTGGGACCAACG CCATGCCCAACGCGCTTATGAAATCCTAAAGCGGGATAAGCAAACCTTGCTTAACCAAGGTCACGGCAAACAAATGGGTT CGACCTGGATTCATGGTGTCGAGCCCAAAGAAGAAGATGTGTACCAGCCAGTTGGTCACACCGAGGGGCATACCTTAATT GTCGGTACGACCGGTGCCGGAAAAACCCGATGCTTTGATGCGATGATCACTCAGGCCATTTTGCGTAATGAAGCCGTGAT TATTATTGACCCTAAGGGAGACAAGGAACTTAAGGATAATGCGCAGCGAGCCTGTATTGCCGCCGGTAGTCCTGAGCGCT TTGTGTATTTTCATCCGGGTTTTCCTGAGCATTCGGTACGGCTTAATCCCCTTAGAAACTTTAACCGGGGCACTGAAATT GCCAGCCGAATTGCGGCACTAATCCCATCTGAAACCGGTGCTGATCCATTTAAAGCCTTTGGCCAAATGGCATTGAACAA CATAGTGCAAGGTCTGTTGCTTACGTCACAACGTCCTGATCTGAAAACACTGAGGCGATTCTTGGAAGGTGGCCCAGAAG GCTTGGTAGTAAAAGCCGTCACAGCCTGGGGTGAGCAGGTGTATCCGAACTTTAGTGTGGAGATCAAGCGCTTTACCGAA AAGGCCAATACCTTGGCTAAACAAGCCATGGCGATGCTGCTTTTCTACTACGAACGCATTCAGCCCGTTGCCGCCAATAC CGATTTGGAAGGACTTTTGAGTATGTTTGAGCATGACAGAACCCACTATTCCAAGATGGTGGCCTCACTGATGCCGGTGC TCAATATGCTCACATCAAGTGAATTAGGGCCACTGTTATCACCGATTGCAAACGATGTGGATGACAGCCGGTTAATTACG GATTCTGGCCGTATTATCAACAATGCCCAAGTGGCGTATATCGGCTTGGATTCATTAACTGACGCCATGGTTGGCAGCGC CATTGGTTCGTTGCTTTTGTCCGATCTCACTGCTGTGGCCGGTGATCGCTATAACTATGGTGTTGAAAATCGTCCCGTAA ATATCTTCATCGATGAGGCGGCTGAAGTCGTCAACGATCCCTTCATTCAACTGCTCAACAAAGGCCGTGGCGCAAAAATG CGTTGTGTAATTGCTACTCAGACCTTTGCTGACTTTGCAGCTCGTACAGGCAGTGAAGCTAAGGCTCGCCAGGTGTTAGG TAACATCAACAACTTGATAGCCCTTCGGGTGATGGATGCCGAAACGCAGCAGTACATTACCGACAATCTGCCTAAGACTC GGTTGCAGTACATCATGCAAACTCAAGGTATGTCGTCCAACTCGGACAGCCCCGCGTTGTTTACCGGCAATCATGGCGAA CGCTTGATGGAGGAAGAAGGCGATATGTTTCCACCGCAGTTATTAGGCCAGCTTCCCAACCTGGAGTACATCGCCAAGCT TTCAGGTGGCCGCGTGATCAAAGGCCGCATTCCTATTTTAACCAGCTCTACACAGGCAGCATAA
Upstream 100 bases:
>100_bases CCAGTTTGATGAGGGGGAAACGGTTCTGTTTACCGCTCACGCTAAACGTTAATCCATTTGAAATTAAGTGGATTGCAAAC GGTTATTTTGCGGAGCATGA
Downstream 100 bases:
>100_bases GGAGTCTGTATGCATCATTCTGTCTGTCTGAAAATGACAACACTTACCAGTAAAGAAATGCTCGCTCAGTGGCAGCAACA TAATCCCCAGTTCAAGGAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 607; Mature: 607
Protein sequence:
>607_residues MKENAYEMPWRTNYEAMAAAGWLVVGATGAIAAEMLTELPPEPFWWMTGISSGMALYRLPEAYRLYKLQKGLKGKPLAFM ALSHLQKVMAKHPDELWLGYGFEWDQRHAQRAYEILKRDKQTLLNQGHGKQMGSTWIHGVEPKEEDVYQPVGHTEGHTLI VGTTGAGKTRCFDAMITQAILRNEAVIIIDPKGDKELKDNAQRACIAAGSPERFVYFHPGFPEHSVRLNPLRNFNRGTEI ASRIAALIPSETGADPFKAFGQMALNNIVQGLLLTSQRPDLKTLRRFLEGGPEGLVVKAVTAWGEQVYPNFSVEIKRFTE KANTLAKQAMAMLLFYYERIQPVAANTDLEGLLSMFEHDRTHYSKMVASLMPVLNMLTSSELGPLLSPIANDVDDSRLIT DSGRIINNAQVAYIGLDSLTDAMVGSAIGSLLLSDLTAVAGDRYNYGVENRPVNIFIDEAAEVVNDPFIQLLNKGRGAKM RCVIATQTFADFAARTGSEAKARQVLGNINNLIALRVMDAETQQYITDNLPKTRLQYIMQTQGMSSNSDSPALFTGNHGE RLMEEEGDMFPPQLLGQLPNLEYIAKLSGGRVIKGRIPILTSSTQAA
Sequences:
>Translated_607_residues MKENAYEMPWRTNYEAMAAAGWLVVGATGAIAAEMLTELPPEPFWWMTGISSGMALYRLPEAYRLYKLQKGLKGKPLAFM ALSHLQKVMAKHPDELWLGYGFEWDQRHAQRAYEILKRDKQTLLNQGHGKQMGSTWIHGVEPKEEDVYQPVGHTEGHTLI VGTTGAGKTRCFDAMITQAILRNEAVIIIDPKGDKELKDNAQRACIAAGSPERFVYFHPGFPEHSVRLNPLRNFNRGTEI ASRIAALIPSETGADPFKAFGQMALNNIVQGLLLTSQRPDLKTLRRFLEGGPEGLVVKAVTAWGEQVYPNFSVEIKRFTE KANTLAKQAMAMLLFYYERIQPVAANTDLEGLLSMFEHDRTHYSKMVASLMPVLNMLTSSELGPLLSPIANDVDDSRLIT DSGRIINNAQVAYIGLDSLTDAMVGSAIGSLLLSDLTAVAGDRYNYGVENRPVNIFIDEAAEVVNDPFIQLLNKGRGAKM RCVIATQTFADFAARTGSEAKARQVLGNINNLIALRVMDAETQQYITDNLPKTRLQYIMQTQGMSSNSDSPALFTGNHGE RLMEEEGDMFPPQLLGQLPNLEYIAKLSGGRVIKGRIPILTSSTQAA >Mature_607_residues MKENAYEMPWRTNYEAMAAAGWLVVGATGAIAAEMLTELPPEPFWWMTGISSGMALYRLPEAYRLYKLQKGLKGKPLAFM ALSHLQKVMAKHPDELWLGYGFEWDQRHAQRAYEILKRDKQTLLNQGHGKQMGSTWIHGVEPKEEDVYQPVGHTEGHTLI VGTTGAGKTRCFDAMITQAILRNEAVIIIDPKGDKELKDNAQRACIAAGSPERFVYFHPGFPEHSVRLNPLRNFNRGTEI ASRIAALIPSETGADPFKAFGQMALNNIVQGLLLTSQRPDLKTLRRFLEGGPEGLVVKAVTAWGEQVYPNFSVEIKRFTE KANTLAKQAMAMLLFYYERIQPVAANTDLEGLLSMFEHDRTHYSKMVASLMPVLNMLTSSELGPLLSPIANDVDDSRLIT DSGRIINNAQVAYIGLDSLTDAMVGSAIGSLLLSDLTAVAGDRYNYGVENRPVNIFIDEAAEVVNDPFIQLLNKGRGAKM RCVIATQTFADFAARTGSEAKARQVLGNINNLIALRVMDAETQQYITDNLPKTRLQYIMQTQGMSSNSDSPALFTGNHGE RLMEEEGDMFPPQLLGQLPNLEYIAKLSGGRVIKGRIPILTSSTQAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 67155; Mature: 67155
Theoretical pI: Translated: 6.66; Mature: 6.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKENAYEMPWRTNYEAMAAAGWLVVGATGAIAAEMLTELPPEPFWWMTGISSGMALYRLP CCCCCCCCCCCCCHHHHHHCCEEEEECHHHHHHHHHHHCCCCCCEEHHHHCCCCHHHCCC EAYRLYKLQKGLKGKPLAFMALSHLQKVMAKHPDELWLGYGFEWDQRHAQRAYEILKRDK HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHEEECCCCHHHHHHHHHHHHHHHHH QTLLNQGHGKQMGSTWIHGVEPKEEDVYQPVGHTEGHTLIVGTTGAGKTRCFDAMITQAI HHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH LRNEAVIIIDPKGDKELKDNAQRACIAAGSPERFVYFHPGFPEHSVRLNPLRNFNRGTEI HCCCCEEEECCCCCHHHHHHHHHEEEECCCCCCEEEECCCCCCCCEEECCHHCCCHHHHH ASRIAALIPSETGADPFKAFGQMALNNIVQGLLLTSQRPDLKTLRRFLEGGPEGLVVKAV HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEEE TAWGEQVYPNFSVEIKRFTEKANTLAKQAMAMLLFYYERIQPVAANTDLEGLLSMFEHDR HHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHH THYSKMVASLMPVLNMLTSSELGPLLSPIANDVDDSRLITDSGRIINNAQVAYIGLDSLT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEECCCEEEEEEHHHHH DAMVGSAIGSLLLSDLTAVAGDRYNYGVENRPVNIFIDEAAEVVNDPFIQLLNKGRGAKM HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHHCCHHHHHHHCCCCCEE RCVIATQTFADFAARTGSEAKARQVLGNINNLIALRVMDAETQQYITDNLPKTRLQYIMQ EEEEEHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCCHHHHHHHHH TQGMSSNSDSPALFTGNHGERLMEEEGDMFPPQLLGQLPNLEYIAKLSGGRVIKGRIPIL HCCCCCCCCCCEEEECCCCHHHHHHCCCCCCHHHHHCCCCHHEEHCCCCCEEEECCCCEE TSSTQAA ECCCCCC >Mature Secondary Structure MKENAYEMPWRTNYEAMAAAGWLVVGATGAIAAEMLTELPPEPFWWMTGISSGMALYRLP CCCCCCCCCCCCCHHHHHHCCEEEEECHHHHHHHHHHHCCCCCCEEHHHHCCCCHHHCCC EAYRLYKLQKGLKGKPLAFMALSHLQKVMAKHPDELWLGYGFEWDQRHAQRAYEILKRDK HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHEEECCCCHHHHHHHHHHHHHHHHH QTLLNQGHGKQMGSTWIHGVEPKEEDVYQPVGHTEGHTLIVGTTGAGKTRCFDAMITQAI HHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH LRNEAVIIIDPKGDKELKDNAQRACIAAGSPERFVYFHPGFPEHSVRLNPLRNFNRGTEI HCCCCEEEECCCCCHHHHHHHHHEEEECCCCCCEEEECCCCCCCCEEECCHHCCCHHHHH ASRIAALIPSETGADPFKAFGQMALNNIVQGLLLTSQRPDLKTLRRFLEGGPEGLVVKAV HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEEE TAWGEQVYPNFSVEIKRFTEKANTLAKQAMAMLLFYYERIQPVAANTDLEGLLSMFEHDR HHCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHH THYSKMVASLMPVLNMLTSSELGPLLSPIANDVDDSRLITDSGRIINNAQVAYIGLDSLT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEECCCEEEEEEHHHHH DAMVGSAIGSLLLSDLTAVAGDRYNYGVENRPVNIFIDEAAEVVNDPFIQLLNKGRGAKM HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHHCCHHHHHHHCCCCCEE RCVIATQTFADFAARTGSEAKARQVLGNINNLIALRVMDAETQQYITDNLPKTRLQYIMQ EEEEEHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCCCHHHHHHHHH TQGMSSNSDSPALFTGNHGERLMEEEGDMFPPQLLGQLPNLEYIAKLSGGRVIKGRIPIL HCCCCCCCCCCEEEECCCCHHHHHHCCCCCCHHHHHCCCCHHEEHCCCCCEEEECCCCEE TSSTQAA ECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA