| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is hsdM [C]
Identifier: 120597917
GI number: 120597917
Start: 1234656
End: 1237079
Strand: Direct
Name: hsdM [C]
Synonym: Sputw3181_1087
Alternate gene names: 120597917
Gene position: 1234656-1237079 (Clockwise)
Preceding gene: 120597916
Following gene: 120597918
Centisome position: 26.22
GC content: 44.39
Gene sequence:
>2424_bases ATGGATCATAGTGTACATAACAAGCTCATCTCATTTATTTGGAATATTGCCGACGACTGTTTACGGGATGTGTACGTTCG CGGTAAGTACCGTGATGTGATTTTACCTATGGTGGTATTACGACGTTTAGATACGTTACTTGAACCCACCAAAGAAGCGG TGCTTGAAGAGGTAAAGTTCCAAAAAGAAGAGATGCAAGCCACGGAGCTTGATGATGAACCATTGAAGGCGGCCAGTGGC TATGTCTTTTACAATACATCTAAATGGACGCTGAAATCCCTATTCAACACCGCAACAAATAACCAACAGATATTACTCGC CAACTTTGAAGAGTACCTGCTTGGCTTTAGCGATAATGTTAAAGAGATCATTGAATGCTTTAACCTTAAATCGCAAATTC GTCACATGGCCTCAAAGCAAGTCCTTCTTGATGTCGTCGAAAAGTTTGTTTCCCCTTACATCAATTTAACTCATGAAACG GTCGAAGACCCGGATGGCAACAAGATGCCAGCCCTTACTAACCTGGGTATGGGTTATGTGTTCGAAGAGTTGATCCGCAA GTTCAACGAAGAAAACAATGAAGAAGCAGGCGAACACTTTACGCCACGTGAAGTTATTGAACTGATGACGCACCTGGTGT TTGACCCTGTGAAAGACCAGTTGCCGCTTACCATGACAGTATATGATCCTGCGTGTGGTAGTGGTGGTATGTTGACTGAA TCTCAAAACTTCATTGAAGAGAAATACCCTAACGACAGCCGTGATGTTTACCTTTACGGCAAAGAGATCAACGACGAGAC CTACGCGATTTGTAAATCGGACATGATGATCAAAGGCAACAACCCTGAGAACATCAAAGTAGGCTCAACCTTGTCTACCG ATGAGTTCGCGGCTTCACGCTTTGACTTTATGTTGTCTAACCCGCCATATGGTAAGAGTTGGGCGTCTGAACAGAAGCAC ATTAAAGACGGCAGTGATGTGATTGACCCGCGTTTTAAGGTTAGCCTGAAAGACTATTGGGGAAATCTCGAAGTGGTGGA TGCCACGCCACGTTCAAGTGATGGCCAGCTGCTCTTCTTAATGGAAATGGTCAACAAGATGAAAGATCCAAGCGTAAGCC CATTAGGCAGCCGGATTGCTTCTGTTCATAATGGCTCATCGCTCTTTACCGGTGATGCGGGCGGTGGCGAAAGTAACATT CGTCGCTTCATCATTGAAAACGACATGCTAGATGCCATCGTTCAGTTACCTAATAACCTGTTCTATAACACCGGCATTAC CACTTACATTTGGGTGTTGAACAACAATAAACCCGAGGCACGTAAAGGTAAGGTGCAACTGATTGATGCTAGCTTGCTAT ACCGTAAGTTGCGTAAGAACTTAGGTAACAAAAACTGCGAATTTGCGCCTGCGCACATCACGGAAATTACCGATACTTAC CTCGCGTGTGTGGGCGTTGAAAGAGCACTTGATGCAAACAATGATCCTGTTGGCATAGCCAGCAAAGTGTTTAGCAATGA CGACTTTGGCTATTACAAAGTCACTATCGAGCGCCCAGACCGCCGAAGAGCCAAGTTCACTCAAGACGCAATAGCCCCAC TGCGTTTTGATAAGCAGCTTAGTGAAGTGATGGAGTACGTGTACGCAGAGCACGGCGAACGTGTTTACGAAAAAACTGGC TATGGTACTGAAAAGAAAAAGAGCTTCTTGAAATCCATTGAGAAAGACATTCTTTCTTGGTGTGAAGATAACGACATCAG TCTCAATGCCAAAGCTAAAGCAAAACTGCTCGATGTGAAACATTGGCTGGCGCTTAAAGCATTGCTTGAAACGGCAGAAA CGCTGATGGCTGACATCGGTAGCATTGAATTTGATGACTTCAATAGTTTTAAAACCCAAGTTGATAAATCGCTAAAAGCC CATGCTATTAAGCTTTCAGCACCTGAGAAAAATGCCATCCTGAACGCGGTGAGCTGGTATGACGAAACCGCCAAGAAAGT GGTGAAAAAGATCGTTAAATTAACGGGTGATAAATTAAACGACCTGCTGGAGCGCTATGAGTGTGAAGTCGCTGACCTGC CAGATTTTGGTTATTACCCCGTTCCTACAACAGAAGGCGGCAAAAAAGGCGAGTTCATTACTTACGAGACCAACTCAGAC CTGCGTGACACAGAATCTGTCCCACTGAAGCAAAGCATTTACCTGTACTTCCTAGACGAAGTGAAGCCTCATGTTGATGA AGCATGGATAAACCTAGATACGGTAAAAATTGGCTATGAAATCAGCTTCAATAAGTATTTCTACCGTCATAAACCGCTGC GTAGTTTAGAGGAGGTCGCAACCGATATTATCAACCTAGAACAAAAAGCCGAAGGTCTTATTGCGCAGATATTGGGCGTC GCAGTAGAAAAGGTTCAGGGGTAA
Upstream 100 bases:
>100_bases CGACCATTGAGACGTTACATAAAGAACAGAATTTTAAATTTATAGTGAAGCCGTTGCAGCAACCTAGTGGGGTGCAACCA ACACTGAACAGGAAAAGAAA
Downstream 100 bases:
>100_bases GCAGTTATGATAAATATTGCTGAAATGCCTAAATATCAAACTTACAAGGACTCTACCGAGGGCTGGATTGGTGATGTACC GGAACACTGGGATATTAGAA
Product: N-6 DNA methylase
Products: NA
Alternate protein names: M.MjaXP [H]
Number of amino acids: Translated: 807; Mature: 807
Protein sequence:
>807_residues MDHSVHNKLISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVKFQKEEMQATELDDEPLKAASG YVFYNTSKWTLKSLFNTATNNQQILLANFEEYLLGFSDNVKEIIECFNLKSQIRHMASKQVLLDVVEKFVSPYINLTHET VEDPDGNKMPALTNLGMGYVFEELIRKFNEENNEEAGEHFTPREVIELMTHLVFDPVKDQLPLTMTVYDPACGSGGMLTE SQNFIEEKYPNDSRDVYLYGKEINDETYAICKSDMMIKGNNPENIKVGSTLSTDEFAASRFDFMLSNPPYGKSWASEQKH IKDGSDVIDPRFKVSLKDYWGNLEVVDATPRSSDGQLLFLMEMVNKMKDPSVSPLGSRIASVHNGSSLFTGDAGGGESNI RRFIIENDMLDAIVQLPNNLFYNTGITTYIWVLNNNKPEARKGKVQLIDASLLYRKLRKNLGNKNCEFAPAHITEITDTY LACVGVERALDANNDPVGIASKVFSNDDFGYYKVTIERPDRRRAKFTQDAIAPLRFDKQLSEVMEYVYAEHGERVYEKTG YGTEKKKSFLKSIEKDILSWCEDNDISLNAKAKAKLLDVKHWLALKALLETAETLMADIGSIEFDDFNSFKTQVDKSLKA HAIKLSAPEKNAILNAVSWYDETAKKVVKKIVKLTGDKLNDLLERYECEVADLPDFGYYPVPTTEGGKKGEFITYETNSD LRDTESVPLKQSIYLYFLDEVKPHVDEAWINLDTVKIGYEISFNKYFYRHKPLRSLEEVATDIINLEQKAEGLIAQILGV AVEKVQG
Sequences:
>Translated_807_residues MDHSVHNKLISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVKFQKEEMQATELDDEPLKAASG YVFYNTSKWTLKSLFNTATNNQQILLANFEEYLLGFSDNVKEIIECFNLKSQIRHMASKQVLLDVVEKFVSPYINLTHET VEDPDGNKMPALTNLGMGYVFEELIRKFNEENNEEAGEHFTPREVIELMTHLVFDPVKDQLPLTMTVYDPACGSGGMLTE SQNFIEEKYPNDSRDVYLYGKEINDETYAICKSDMMIKGNNPENIKVGSTLSTDEFAASRFDFMLSNPPYGKSWASEQKH IKDGSDVIDPRFKVSLKDYWGNLEVVDATPRSSDGQLLFLMEMVNKMKDPSVSPLGSRIASVHNGSSLFTGDAGGGESNI RRFIIENDMLDAIVQLPNNLFYNTGITTYIWVLNNNKPEARKGKVQLIDASLLYRKLRKNLGNKNCEFAPAHITEITDTY LACVGVERALDANNDPVGIASKVFSNDDFGYYKVTIERPDRRRAKFTQDAIAPLRFDKQLSEVMEYVYAEHGERVYEKTG YGTEKKKSFLKSIEKDILSWCEDNDISLNAKAKAKLLDVKHWLALKALLETAETLMADIGSIEFDDFNSFKTQVDKSLKA HAIKLSAPEKNAILNAVSWYDETAKKVVKKIVKLTGDKLNDLLERYECEVADLPDFGYYPVPTTEGGKKGEFITYETNSD LRDTESVPLKQSIYLYFLDEVKPHVDEAWINLDTVKIGYEISFNKYFYRHKPLRSLEEVATDIINLEQKAEGLIAQILGV AVEKVQG >Mature_807_residues MDHSVHNKLISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVKFQKEEMQATELDDEPLKAASG YVFYNTSKWTLKSLFNTATNNQQILLANFEEYLLGFSDNVKEIIECFNLKSQIRHMASKQVLLDVVEKFVSPYINLTHET VEDPDGNKMPALTNLGMGYVFEELIRKFNEENNEEAGEHFTPREVIELMTHLVFDPVKDQLPLTMTVYDPACGSGGMLTE SQNFIEEKYPNDSRDVYLYGKEINDETYAICKSDMMIKGNNPENIKVGSTLSTDEFAASRFDFMLSNPPYGKSWASEQKH IKDGSDVIDPRFKVSLKDYWGNLEVVDATPRSSDGQLLFLMEMVNKMKDPSVSPLGSRIASVHNGSSLFTGDAGGGESNI RRFIIENDMLDAIVQLPNNLFYNTGITTYIWVLNNNKPEARKGKVQLIDASLLYRKLRKNLGNKNCEFAPAHITEITDTY LACVGVERALDANNDPVGIASKVFSNDDFGYYKVTIERPDRRRAKFTQDAIAPLRFDKQLSEVMEYVYAEHGERVYEKTG YGTEKKKSFLKSIEKDILSWCEDNDISLNAKAKAKLLDVKHWLALKALLETAETLMADIGSIEFDDFNSFKTQVDKSLKA HAIKLSAPEKNAILNAVSWYDETAKKVVKKIVKLTGDKLNDLLERYECEVADLPDFGYYPVPTTEGGKKGEFITYETNSD LRDTESVPLKQSIYLYFLDEVKPHVDEAWINLDTVKIGYEISFNKYFYRHKPLRSLEEVATDIINLEQKAEGLIAQILGV AVEKVQG
Specific function: Methylation of specific adenine residues; required for both restriction and modification activities [H]
COG id: COG0286
COG function: function code V; Type I restriction-modification system methyltransferase subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022749 - InterPro: IPR003356 - InterPro: IPR002052 - InterPro: IPR002296 [H]
Pfam domain/function: PF12161 HsdM_N; PF02384 N6_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 91780; Mature: 91780
Theoretical pI: Translated: 4.82; Mature: 4.82
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDHSVHNKLISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVKF CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH QKEEMQATELDDEPLKAASGYVFYNTSKWTLKSLFNTATNNQQILLANFEEYLLGFSDNV HHHHHHHHCCCCCCHHHHCCEEEEECCHHHHHHHHHHCCCCCEEEEECHHHHHHCCCCCH KEIIECFNLKSQIRHMASKQVLLDVVEKFVSPYINLTHETVEDPDGNKMPALTNLGMGYV HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCHHHCCHHHH FEELIRKFNEENNEEAGEHFTPREVIELMTHLVFDPVKDQLPLTMTVYDPACGSGGMLTE HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCC SQNFIEEKYPNDSRDVYLYGKEINDETYAICKSDMMIKGNNPENIKVGSTLSTDEFAASR CHHHHHHHCCCCCCEEEEEECCCCCCHHEEECCCEEEECCCCCCEEECCCCCCHHHHHHH FDFMLSNPPYGKSWASEQKHIKDGSDVIDPRFKVSLKDYWGNLEVVDATPRSSDGQLLFL HHHEECCCCCCCCHHCHHHHCCCCCCCCCCCEEEEHHHHCCCEEEEECCCCCCCCCEEEH MEMVNKMKDPSVSPLGSRIASVHNGSSLFTGDAGGGESNIRRFIIENDMLDAIVQLPNNL HHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHEEEHHHHHHHHHHHCCCCE FYNTGITTYIWVLNNNKPEARKGKVQLIDASLLYRKLRKNLGNKNCEFAPAHITEITDTY EEECCCEEEEEEEECCCCCCCCCCEEEECHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH LACVGVERALDANNDPVGIASKVFSNDDFGYYKVTIERPDRRRAKFTQDAIAPLRFDKQL HHHHHHHHHHCCCCCCCCHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHH SEVMEYVYAEHGERVYEKTGYGTEKKKSFLKSIEKDILSWCEDNDISLNAKAKAKLLDVK HHHHHHHHHHHCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHH HWLALKALLETAETLMADIGSIEFDDFNSFKTQVDKSLKAHAIKLSAPEKNAILNAVSWY HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHH DETAKKVVKKIVKLTGDKLNDLLERYECEVADLPDFGYYPVPTTEGGKKGEFITYETNSD HHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC LRDTESVPLKQSIYLYFLDEVKPHVDEAWINLDTVKIGYEISFNKYFYRHKPLRSLEEVA CCCCCCCCCCHHEEEEEEHHHCCCHHHHHEEEEEEEEEEEEEECHHHHHCCCHHHHHHHH TDIINLEQKAEGLIAQILGVAVEKVQG HHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MDHSVHNKLISFIWNIADDCLRDVYVRGKYRDVILPMVVLRRLDTLLEPTKEAVLEEVKF CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH QKEEMQATELDDEPLKAASGYVFYNTSKWTLKSLFNTATNNQQILLANFEEYLLGFSDNV HHHHHHHHCCCCCCHHHHCCEEEEECCHHHHHHHHHHCCCCCEEEEECHHHHHHCCCCCH KEIIECFNLKSQIRHMASKQVLLDVVEKFVSPYINLTHETVEDPDGNKMPALTNLGMGYV HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCHHHCCHHHH FEELIRKFNEENNEEAGEHFTPREVIELMTHLVFDPVKDQLPLTMTVYDPACGSGGMLTE HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCC SQNFIEEKYPNDSRDVYLYGKEINDETYAICKSDMMIKGNNPENIKVGSTLSTDEFAASR CHHHHHHHCCCCCCEEEEEECCCCCCHHEEECCCEEEECCCCCCEEECCCCCCHHHHHHH FDFMLSNPPYGKSWASEQKHIKDGSDVIDPRFKVSLKDYWGNLEVVDATPRSSDGQLLFL HHHEECCCCCCCCHHCHHHHCCCCCCCCCCCEEEEHHHHCCCEEEEECCCCCCCCCEEEH MEMVNKMKDPSVSPLGSRIASVHNGSSLFTGDAGGGESNIRRFIIENDMLDAIVQLPNNL HHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHEEEHHHHHHHHHHHCCCCE FYNTGITTYIWVLNNNKPEARKGKVQLIDASLLYRKLRKNLGNKNCEFAPAHITEITDTY EEECCCEEEEEEEECCCCCCCCCCEEEECHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH LACVGVERALDANNDPVGIASKVFSNDDFGYYKVTIERPDRRRAKFTQDAIAPLRFDKQL HHHHHHHHHHCCCCCCCCHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHH SEVMEYVYAEHGERVYEKTGYGTEKKKSFLKSIEKDILSWCEDNDISLNAKAKAKLLDVK HHHHHHHHHHHCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHH HWLALKALLETAETLMADIGSIEFDDFNSFKTQVDKSLKAHAIKLSAPEKNAILNAVSWY HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHH DETAKKVVKKIVKLTGDKLNDLLERYECEVADLPDFGYYPVPTTEGGKKGEFITYETNSD HHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC LRDTESVPLKQSIYLYFLDEVKPHVDEAWINLDTVKIGYEISFNKYFYRHKPLRSLEEVA CCCCCCCCCCHHEEEEEEHHHCCCHHHHHEEEEEEEEEEEEEECHHHHHCCCHHHHHHHH TDIINLEQKAEGLIAQILGVAVEKVQG HHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]