| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597916
Identifier: 120597916
GI number: 120597916
Start: 1233619
End: 1234542
Strand: Direct
Name: 120597916
Synonym: Sputw3181_1086
Alternate gene names: NA
Gene position: 1233619-1234542 (Clockwise)
Preceding gene: 120597915
Following gene: 120597917
Centisome position: 26.2
GC content: 48.92
Gene sequence:
>924_bases ATGACAAATGATGGTCTGAAACAAACGGTAGTGGCGAAGTCAGATAGGCTTTCGCAGATAGCGCAGTTGCCACAAGCAAC CAGGGATCGCATTGCCCACATCGATTTCACCTTATTGTTTAAGGGAGAAGCGGTACGGGCGGATTTAGTCGATCGCTTCA GCATAGCCGCTGCACAAGCAACGAAAGACTTCACAATGTACCGAGAGCTTGCACCAGGCAACATTGAGTATGACCAAAAG CTCAAATTGCATAAGCGTGGTGAAGCTTTTGCCCCATTGTTCGAGTACGACGTTGTGAGAACACTGGCAACCATTAGCCA AGGGTACGGTGATGGCTTCACTGGCAAGGTAAAACCACCCCTTGCTTGTGAAGCGCCTTATCACCTCAACAAGCCGAGTT TATCGATAGTGGCGAAAGTCACCGAGGCCATAAACAAAGGCAAAGCCTTGAGCATCACCTATGTGTCGTTATCGAGCGGT GAAACAACGCGTGAAATTGTACCGCATACGCTGGTGGACAATGGCCTGCGTTGGCATGTTCGTGGTTTTGACCGCAAGCA TGGTGAGTTCCGTGACTTTGTATTGACCCGCATTAAAGCTGCGGTTGTGCTTGAAGATTCCACTTTGTCTGAAACGGAGC TCGAAACCCAAGACCGGCAATGGAACAGATTTGTAGAGCTTGAGTTAGTGCCACACCCACGTATTGAGCACAGCGAAGCG ATAGAGCTGGACTATGGCATGACGGGTGGCGTTCTAAAGGTTGAGATTAGAGCAGCAACCGCTGGCTATTTGCTACGCCA ATGGCATGTGGATTGTTCTACGGAACACTCATTAATGGGCTTTGAGTATCAGCTTTGGTTGCGTAACAGCCAGGCTCTTT ATGGTGTCACAAACTTAAGTATTGCGCCGGGTAGAACAAGTTAA
Upstream 100 bases:
>100_bases AGCAGCATTGAGTGACACTATTCAATGTGATTACGCCATGACGGTCCTTACTTTATAAGCAGAGTATTAAGAATCTGGTT GAATTGGATAAACAAGACGC
Downstream 100 bases:
>100_bases TCGAACGATGTAGCGACCATTGAGACGTTACATAAAGAACAGAATTTTAAATTTATAGTGAAGCCGTTGCAGCAACCTAG TGGGGTGCAACCAACACTGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 307; Mature: 306
Protein sequence:
>307_residues MTNDGLKQTVVAKSDRLSQIAQLPQATRDRIAHIDFTLLFKGEAVRADLVDRFSIAAAQATKDFTMYRELAPGNIEYDQK LKLHKRGEAFAPLFEYDVVRTLATISQGYGDGFTGKVKPPLACEAPYHLNKPSLSIVAKVTEAINKGKALSITYVSLSSG ETTREIVPHTLVDNGLRWHVRGFDRKHGEFRDFVLTRIKAAVVLEDSTLSETELETQDRQWNRFVELELVPHPRIEHSEA IELDYGMTGGVLKVEIRAATAGYLLRQWHVDCSTEHSLMGFEYQLWLRNSQALYGVTNLSIAPGRTS
Sequences:
>Translated_307_residues MTNDGLKQTVVAKSDRLSQIAQLPQATRDRIAHIDFTLLFKGEAVRADLVDRFSIAAAQATKDFTMYRELAPGNIEYDQK LKLHKRGEAFAPLFEYDVVRTLATISQGYGDGFTGKVKPPLACEAPYHLNKPSLSIVAKVTEAINKGKALSITYVSLSSG ETTREIVPHTLVDNGLRWHVRGFDRKHGEFRDFVLTRIKAAVVLEDSTLSETELETQDRQWNRFVELELVPHPRIEHSEA IELDYGMTGGVLKVEIRAATAGYLLRQWHVDCSTEHSLMGFEYQLWLRNSQALYGVTNLSIAPGRTS >Mature_306_residues TNDGLKQTVVAKSDRLSQIAQLPQATRDRIAHIDFTLLFKGEAVRADLVDRFSIAAAQATKDFTMYRELAPGNIEYDQKL KLHKRGEAFAPLFEYDVVRTLATISQGYGDGFTGKVKPPLACEAPYHLNKPSLSIVAKVTEAINKGKALSITYVSLSSGE TTREIVPHTLVDNGLRWHVRGFDRKHGEFRDFVLTRIKAAVVLEDSTLSETELETQDRQWNRFVELELVPHPRIEHSEAI ELDYGMTGGVLKVEIRAATAGYLLRQWHVDCSTEHSLMGFEYQLWLRNSQALYGVTNLSIAPGRTS
Specific function: Unknown
COG id: COG2378
COG function: function code K; Predicted transcriptional regulator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34476; Mature: 34344
Theoretical pI: Translated: 7.08; Mature: 7.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNDGLKQTVVAKSDRLSQIAQLPQATRDRIAHIDFTLLFKGEAVRADLVDRFSIAAAQA CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHEEEEEEEEEEECCCHHHHHHHHHHHHHHHH TKDFTMYRELAPGNIEYDQKLKLHKRGEAFAPLFEYDVVRTLATISQGYGDGFTGKVKPP HHHHHHHHHCCCCCCCCCCEEHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC LACEAPYHLNKPSLSIVAKVTEAINKGKALSITYVSLSSGETTREIVPHTLVDNGLRWHV EECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHCCHHHHCCCCEEEE RGFDRKHGEFRDFVLTRIKAAVVLEDSTLSETELETQDRQWNRFVELELVPHPRIEHSEA ECCCCCCCHHHHHHHHHHEEEEEEECCCCCCHHHHHCCCCCCEEEEEEECCCCCCCCCCE IELDYGMTGGVLKVEIRAATAGYLLRQWHVDCSTEHSLMGFEYQLWLRNSQALYGVTNLS EEEECCCCCCEEEEEEEECHHHHHHHHEECCCCCCCCEECEEEEEEEECCCEEEEEEEEE IAPGRTS ECCCCCC >Mature Secondary Structure TNDGLKQTVVAKSDRLSQIAQLPQATRDRIAHIDFTLLFKGEAVRADLVDRFSIAAAQA CCCCHHHHHHHHHHHHHHHHHCCHHHHHHEEEEEEEEEEECCCHHHHHHHHHHHHHHHH TKDFTMYRELAPGNIEYDQKLKLHKRGEAFAPLFEYDVVRTLATISQGYGDGFTGKVKPP HHHHHHHHHCCCCCCCCCCEEHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC LACEAPYHLNKPSLSIVAKVTEAINKGKALSITYVSLSSGETTREIVPHTLVDNGLRWHV EECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHCCHHHHCCCCEEEE RGFDRKHGEFRDFVLTRIKAAVVLEDSTLSETELETQDRQWNRFVELELVPHPRIEHSEA ECCCCCCCHHHHHHHHHHEEEEEEECCCCCCHHHHHCCCCCCEEEEEEECCCCCCCCCCE IELDYGMTGGVLKVEIRAATAGYLLRQWHVDCSTEHSLMGFEYQLWLRNSQALYGVTNLS EEEECCCCCCEEEEEEEECHHHHHHHHEECCCCCCCCEECEEEEEEEECCCEEEEEEEEE IAPGRTS ECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA