| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597886
Identifier: 120597886
GI number: 120597886
Start: 1200619
End: 1201437
Strand: Direct
Name: 120597886
Synonym: Sputw3181_1056
Alternate gene names: NA
Gene position: 1200619-1201437 (Clockwise)
Preceding gene: 120597885
Following gene: 120597887
Centisome position: 25.5
GC content: 43.22
Gene sequence:
>819_bases ATGAAATTACGTCTGATTGCATTATTCACCTCGCTCTGCATTAGCCCTTTGGCAAGCAGCCATGACAGATGGATTCTACC TAGCCATTTTAATGTTTCCGCCGAAAGCCAAGAGGCTGTGTGGATCACTTCCGATGTGTCGGCCAGTAATCAAGTTTTTA TGATGGATAAACCTTATACTGCCAGCGATGTAAGGGTATTACAGCCCAACGGAAAATCAACGTCTCCAAGCTCAAGTTAC ACTGGAGGGCGTAAATCGGTGTTCGATGTGCAGTTAACACAAGATGGTACCTATAAGTTTGAAAAAGAAGTATCTCCGCG TTATTTTTCTCAATATAAAGTCAAGGGAAAGGAGGGCGTTGTCCGTAGTCGCTTAGATAAAAAATCAACGGCAGCGGCTA TGCCTAAAGGGGCCTATGATCTTGAAAGTGCCTTAAATGTGTCGCGGGTTGAAACCTACGTAACACGTAATAAGCCAACC GATGAAGTGTTAAAGCCTAAAGGCGAGTTTTTAGAGCTAGTGCCTGTAACCCATCCTGCAGATATCGTTGAAAATGAAGC CGCTATATTGCAATTTGTTTTCGATGGTAAGCCTGTTGAAGGCGTAAAAGTCGCCATTATGAAAGACGGTAGCTTATATC GTAACAAGCCAGAAGAAATCGAATTCACCTCAGATAAAGAAGGTAAAATTTCAATGACCTTACCTTCAGCGGGACGTTAT CTCTTACATGCGGCGATTGAGCGCCCGAATTCAGATAAATCCCTTGCTGATAAAACCGTAAGCGAAATATTTTTAACCTT CGAGGCGGGGCTTGAATAG
Upstream 100 bases:
>100_bases CAGATCCCTGCAACAACTGAAACTGGCATTATCGATATCCGCTTAAGCGGAATGACTCGCTAAGCTCGCTATAGTTGATT GTTTAACTTAAGGAAAAAAT
Downstream 100 bases:
>100_bases GCGGGTTAACTGCTATTTGAGGTTTAAATTTTAAGTATTTATGCCCACTCTCTTAATGGCGAGTGGGCATTTTTTATTGC CATTCCATACTAAAATTTGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 272; Mature: 272
Protein sequence:
>272_residues MKLRLIALFTSLCISPLASSHDRWILPSHFNVSAESQEAVWITSDVSASNQVFMMDKPYTASDVRVLQPNGKSTSPSSSY TGGRKSVFDVQLTQDGTYKFEKEVSPRYFSQYKVKGKEGVVRSRLDKKSTAAAMPKGAYDLESALNVSRVETYVTRNKPT DEVLKPKGEFLELVPVTHPADIVENEAAILQFVFDGKPVEGVKVAIMKDGSLYRNKPEEIEFTSDKEGKISMTLPSAGRY LLHAAIERPNSDKSLADKTVSEIFLTFEAGLE
Sequences:
>Translated_272_residues MKLRLIALFTSLCISPLASSHDRWILPSHFNVSAESQEAVWITSDVSASNQVFMMDKPYTASDVRVLQPNGKSTSPSSSY TGGRKSVFDVQLTQDGTYKFEKEVSPRYFSQYKVKGKEGVVRSRLDKKSTAAAMPKGAYDLESALNVSRVETYVTRNKPT DEVLKPKGEFLELVPVTHPADIVENEAAILQFVFDGKPVEGVKVAIMKDGSLYRNKPEEIEFTSDKEGKISMTLPSAGRY LLHAAIERPNSDKSLADKTVSEIFLTFEAGLE >Mature_272_residues MKLRLIALFTSLCISPLASSHDRWILPSHFNVSAESQEAVWITSDVSASNQVFMMDKPYTASDVRVLQPNGKSTSPSSSY TGGRKSVFDVQLTQDGTYKFEKEVSPRYFSQYKVKGKEGVVRSRLDKKSTAAAMPKGAYDLESALNVSRVETYVTRNKPT DEVLKPKGEFLELVPVTHPADIVENEAAILQFVFDGKPVEGVKVAIMKDGSLYRNKPEEIEFTSDKEGKISMTLPSAGRY LLHAAIERPNSDKSLADKTVSEIFLTFEAGLE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30154; Mature: 30154
Theoretical pI: Translated: 6.97; Mature: 6.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLRLIALFTSLCISPLASSHDRWILPSHFNVSAESQEAVWITSDVSASNQVFMMDKPYT CEEEHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCC ASDVRVLQPNGKSTSPSSSYTGGRKSVFDVQLTQDGTYKFEKEVSPRYFSQYKVKGKEGV CCCEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEECCCCCCHHHHHEEECCCCCH VRSRLDKKSTAAAMPKGAYDLESALNVSRVETYVTRNKPTDEVLKPKGEFLELVPVTHPA HHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHCCCCCHHHHHCCCCCEEEEEECCCCH DIVENEAAILQFVFDGKPVEGVKVAIMKDGSLYRNKPEEIEFTSDKEGKISMTLPSAGRY HHHCCCCEEEEEEECCCCCCCEEEEEEECCCHHCCCCCCEEECCCCCCEEEEECCCCCHH LLHAAIERPNSDKSLADKTVSEIFLTFEAGLE HHHHHHCCCCCCHHHHHHHHHHEEEEEECCCC >Mature Secondary Structure MKLRLIALFTSLCISPLASSHDRWILPSHFNVSAESQEAVWITSDVSASNQVFMMDKPYT CEEEHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCC ASDVRVLQPNGKSTSPSSSYTGGRKSVFDVQLTQDGTYKFEKEVSPRYFSQYKVKGKEGV CCCEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEECCCCCCHHHHHEEECCCCCH VRSRLDKKSTAAAMPKGAYDLESALNVSRVETYVTRNKPTDEVLKPKGEFLELVPVTHPA HHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHCCCCCHHHHHCCCCCEEEEEECCCCH DIVENEAAILQFVFDGKPVEGVKVAIMKDGSLYRNKPEEIEFTSDKEGKISMTLPSAGRY HHHCCCCEEEEEEECCCCCCCEEEEEEECCCHHCCCCCCEEECCCCCCEEEEECCCCCHH LLHAAIERPNSDKSLADKTVSEIFLTFEAGLE HHHHHHCCCCCCHHHHHHHHHHEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA