| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597797
Identifier: 120597797
GI number: 120597797
Start: 1100053
End: 1100484
Strand: Direct
Name: 120597797
Synonym: Sputw3181_0967
Alternate gene names: NA
Gene position: 1100053-1100484 (Clockwise)
Preceding gene: 120597796
Following gene: 120597799
Centisome position: 23.36
GC content: 42.59
Gene sequence:
>432_bases ATGCGTAAAGGTCAAATACTCTGGCCCACAGATTTCTCGGAAACTGCGGCCCATGCACTAAGTTATGCTATTGAAATGGC TAATTTGTATAATGTTGGTCTAAAAATTCTACACGTGGTTGAGCAGCCTATTGGTGATGAAAACTTTATGATTTTATCCA TCACACCTGAAGAGCTGGCTAAGAGTATGGAAGATGCGGCGGCCAATAAAATGCAAGCATTGCTAGATAAACTAAAAACG GATCTTCCAATTAGTACTTTGATCCGCCGTGGTGATCCTGTCGATCAAATTTTAGAGGAAGCGAACGGTAAAGATATTGG CATGGTGGTGATTGCCAGTCATGGACGGAGTGGGTTATCACACTTTTTACATACTAATGTCGCTGAAGCTGTGGCAAATG GCGCGGTATGTCCTGTGCTTGTCGTTAAGTAA
Upstream 100 bases:
>100_bases CGATAATGGTGATGCGGTAGCTTGGTTACGAGATTAGTTCTATTACCTAAGTTTTACCTTCACTTAGTAATTCAGTTGCG CCATAGAAGGAGTACAGATT
Downstream 100 bases:
>100_bases TTTTTCTATTGGCGGCGGTTAGAGCGCATCATTTCCGATGGGGTTACGTTCTATTATTTTGGTTGATGCCTCCGCTTCAT GTTCTAGGGACATGAGGCGG
Product: UspA domain-containing protein
Products: NA
Alternate protein names: UspA Domain Protein; Universal Stress Protein; Universal Stress Protein Family; Stress Response Protein; Universal Stress Protein UspA; Universal Stress Protein Usp; Universal Stress Protein UspA-Like Protein; Uspa Domain-Containing Protein
Number of amino acids: Translated: 143; Mature: 143
Protein sequence:
>143_residues MRKGQILWPTDFSETAAHALSYAIEMANLYNVGLKILHVVEQPIGDENFMILSITPEELAKSMEDAAANKMQALLDKLKT DLPISTLIRRGDPVDQILEEANGKDIGMVVIASHGRSGLSHFLHTNVAEAVANGAVCPVLVVK
Sequences:
>Translated_143_residues MRKGQILWPTDFSETAAHALSYAIEMANLYNVGLKILHVVEQPIGDENFMILSITPEELAKSMEDAAANKMQALLDKLKT DLPISTLIRRGDPVDQILEEANGKDIGMVVIASHGRSGLSHFLHTNVAEAVANGAVCPVLVVK >Mature_143_residues MRKGQILWPTDFSETAAHALSYAIEMANLYNVGLKILHVVEQPIGDENFMILSITPEELAKSMEDAAANKMQALLDKLKT DLPISTLIRRGDPVDQILEEANGKDIGMVVIASHGRSGLSHFLHTNVAEAVANGAVCPVLVVK
Specific function: Unknown
COG id: COG0589
COG function: function code T; Universal stress protein UspA and related nucleotide-binding proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15503; Mature: 15503
Theoretical pI: Translated: 5.17; Mature: 5.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKGQILWPTDFSETAAHALSYAIEMANLYNVGLKILHVVEQPIGDENFMILSITPEELA CCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHH KSMEDAAANKMQALLDKLKTDLPISTLIRRGDPVDQILEEANGKDIGMVVIASHGRSGLS HHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHCCCCCEEEEEEECCCCHHHH HFLHTNVAEAVANGAVCPVLVVK HHHHHHHHHHHHCCCCCEEEEEC >Mature Secondary Structure MRKGQILWPTDFSETAAHALSYAIEMANLYNVGLKILHVVEQPIGDENFMILSITPEELA CCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHH KSMEDAAANKMQALLDKLKTDLPISTLIRRGDPVDQILEEANGKDIGMVVIASHGRSGLS HHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHCCCCCEEEEEEECCCCHHHH HFLHTNVAEAVANGAVCPVLVVK HHHHHHHHHHHHCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA