| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is yghX [H]
Identifier: 120597773
GI number: 120597773
Start: 1073144
End: 1074139
Strand: Direct
Name: yghX [H]
Synonym: Sputw3181_0943
Alternate gene names: 120597773
Gene position: 1073144-1074139 (Clockwise)
Preceding gene: 120597772
Following gene: 120597774
Centisome position: 22.79
GC content: 47.89
Gene sequence:
>996_bases ATGACACAGCGACCAACGCAGCCTCACCCCACCGCTAGCCAATCTAGTGCGATTACAACTAATCCACAACAACCTATTCC ACAAGAAGCCTTCGATTGGTATGACGAATATGCCCACGGTATTATCGATCGTCGTGAGTTTATGGCTCGTCTTGCTGGGC TGGTGGCGCTCGGTTTTACCCTGACAAGCCTTACCAGCGCATTGCTGCCTAACTATGCCTTAGCCGAACAAGTTTCCTTT AATGATCCCAGTATTAAAGCCAGCTATGTAAAATTTCCTTCTCCAAATGGCTATGGTGAGGGGCGCGGTTATTTGGTGGT ACCTAGCAGCCTGCTTAAGATTGAAGTGGATGGTAAACCTGCTGAAACATTGATTTACGACACCGATAAAAAAGCCCCTG TGGTACTTGTGGTGCATGAAAATCGTGGTCTTAATCCTTATATTGAAGATGTTGCCCGCCGTTTAGCGGCGCAAGGCTAT ATTGCTTTCGCTCCCGATGCGCTCTACTCCCTCGGTGGTTACCCGGGCAATGACGATACGGGCCGTGCGATGCAAAGCAA TTTGGATCGCGCCAAAATGGAGCAAGATTTTATTGCCGCTGCACTCTTTTTAAAGTCCCACCCCCAAAGTAGTGGCAAAC TCGGCGCTGTGGGTTTTTGTTTTGGTGGCTATATCGTCAATATGTTAGCCGCCACCATTCCAGATGATCTTAATGCTGGT GTTTCTTTCTACGGTACGCCCGCCGCACCCGAACTGCGTAGCCGTGTAAAAGGGCCGTTAATGCTGCAGTTTGCTGAGCT TGATCAGCGGATTAATGACACTTGGGCAGAATATGAAGCGCAGCTAAAAGCCAATAAAGCCGATTATGTTGCTTACCTTT ACCCCAAGGTGAACCACGGTTTTCATAATGATTCCACCGCAAGGTATGATAAAACGACCGCCGAATTTGCTTGGTCACGC AGTTTAGATTTCTTCTCGAAATATCTAGGTGGTTAA
Upstream 100 bases:
>100_bases GCCTTCGTTGTGTTTAATCCTTTACTCTTTATTAACACTAAGAACCACAAGCTAGGTAAGATCAATACCTGCGGTTAGCT TGTTTAATGGAGTTTTATCT
Downstream 100 bases:
>100_bases CTCAGATGAGTGCACTTAGTGAATGAGTTGCACTCTTCTATCTACGCGTCATCCACGACTTGCCTATTTGCTTAATATTA CCGCTCAGGCGACTGGGCTA
Product: dienelactone hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 331; Mature: 330
Protein sequence:
>331_residues MTQRPTQPHPTASQSSAITTNPQQPIPQEAFDWYDEYAHGIIDRREFMARLAGLVALGFTLTSLTSALLPNYALAEQVSF NDPSIKASYVKFPSPNGYGEGRGYLVVPSSLLKIEVDGKPAETLIYDTDKKAPVVLVVHENRGLNPYIEDVARRLAAQGY IAFAPDALYSLGGYPGNDDTGRAMQSNLDRAKMEQDFIAAALFLKSHPQSSGKLGAVGFCFGGYIVNMLAATIPDDLNAG VSFYGTPAAPELRSRVKGPLMLQFAELDQRINDTWAEYEAQLKANKADYVAYLYPKVNHGFHNDSTARYDKTTAEFAWSR SLDFFSKYLGG
Sequences:
>Translated_331_residues MTQRPTQPHPTASQSSAITTNPQQPIPQEAFDWYDEYAHGIIDRREFMARLAGLVALGFTLTSLTSALLPNYALAEQVSF NDPSIKASYVKFPSPNGYGEGRGYLVVPSSLLKIEVDGKPAETLIYDTDKKAPVVLVVHENRGLNPYIEDVARRLAAQGY IAFAPDALYSLGGYPGNDDTGRAMQSNLDRAKMEQDFIAAALFLKSHPQSSGKLGAVGFCFGGYIVNMLAATIPDDLNAG VSFYGTPAAPELRSRVKGPLMLQFAELDQRINDTWAEYEAQLKANKADYVAYLYPKVNHGFHNDSTARYDKTTAEFAWSR SLDFFSKYLGG >Mature_330_residues TQRPTQPHPTASQSSAITTNPQQPIPQEAFDWYDEYAHGIIDRREFMARLAGLVALGFTLTSLTSALLPNYALAEQVSFN DPSIKASYVKFPSPNGYGEGRGYLVVPSSLLKIEVDGKPAETLIYDTDKKAPVVLVVHENRGLNPYIEDVARRLAAQGYI AFAPDALYSLGGYPGNDDTGRAMQSNLDRAKMEQDFIAAALFLKSHPQSSGKLGAVGFCFGGYIVNMLAATIPDDLNAGV SFYGTPAAPELRSRVKGPLMLQFAELDQRINDTWAEYEAQLKANKADYVAYLYPKVNHGFHNDSTARYDKTTAEFAWSRS LDFFSKYLGG
Specific function: Unknown
COG id: COG0412
COG function: function code Q; Dienelactone hydrolase and related enzymes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI48994982, Length=218, Percent_Identity=30.7339449541284, Blast_Score=86, Evalue=3e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002925 [H]
Pfam domain/function: PF01738 DLH [H]
EC number: NA
Molecular weight: Translated: 36389; Mature: 36258
Theoretical pI: Translated: 5.66; Mature: 5.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQRPTQPHPTASQSSAITTNPQQPIPQEAFDWYDEYAHGIIDRREFMARLAGLVALGFT CCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTSLTSALLPNYALAEQVSFNDPSIKASYVKFPSPNGYGEGRGYLVVPSSLLKIEVDGKP HHHHHHHHCCCHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCEEEECCCEEEEEECCCC AETLIYDTDKKAPVVLVVHENRGLNPYIEDVARRLAAQGYIAFAPDALYSLGGYPGNDDT CCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHCCCCCCCCCC GRAMQSNLDRAKMEQDFIAAALFLKSHPQSSGKLGAVGFCFGGYIVNMLAATIPDDLNAG HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC VSFYGTPAAPELRSRVKGPLMLQFAELDQRINDTWAEYEAQLKANKADYVAYLYPKVNHG CEECCCCCCHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC FHNDSTARYDKTTAEFAWSRSLDFFSKYLGG CCCCCCCCCCCHHHHHHHHCCHHHHHHHHCC >Mature Secondary Structure TQRPTQPHPTASQSSAITTNPQQPIPQEAFDWYDEYAHGIIDRREFMARLAGLVALGFT CCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LTSLTSALLPNYALAEQVSFNDPSIKASYVKFPSPNGYGEGRGYLVVPSSLLKIEVDGKP HHHHHHHHCCCHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCEEEECCCEEEEEECCCC AETLIYDTDKKAPVVLVVHENRGLNPYIEDVARRLAAQGYIAFAPDALYSLGGYPGNDDT CCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHCCCCCCCCCC GRAMQSNLDRAKMEQDFIAAALFLKSHPQSSGKLGAVGFCFGGYIVNMLAATIPDDLNAG HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC VSFYGTPAAPELRSRVKGPLMLQFAELDQRINDTWAEYEAQLKANKADYVAYLYPKVNHG CEECCCCCCHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC FHNDSTARYDKTTAEFAWSRSLDFFSKYLGG CCCCCCCCCCCHHHHHHHHCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]