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The map label for this gene is yciR [C]

Identifier: 120597759

GI number: 120597759

Start: 1055718

End: 1057145

Strand: Direct

Name: yciR [C]

Synonym: Sputw3181_0929

Alternate gene names: 120597759

Gene position: 1055718-1057145 (Clockwise)

Preceding gene: 120597757

Following gene: 120597769

Centisome position: 22.42

GC content: 41.32

Gene sequence:

>1428_bases
GTGAATAATGATGAATACACTTCCCTAAGTCAGTTTATTGATCTGCTGTTGGATGCGATCTGTGTTGTCGATAAAACGGG
GCGGTTTGAATTTGTTAGTGCAGGAGCAGAACGAATTTTTGGTTACACCCCAGAAGAAATGATTGGTATGCAGATGCTAG
AGCTTGTATTACCTGAAGATAGAGAGCGCACGTTAGCGACAGCTAAAGAAATTATGGATGGTCGTTTTAAGGTTGACTTT
GAAAATCGCTATGTGCGAAAAGATGGTTCAATAGTCGATATTCTTTGGTCTGCTCGTTGGTCAGAGGACCATCAGCAGCG
TGTCGCTGTTGCTCGAGATATTACGAAGAGAAAAAATGCCGAGCGTAGACAGGCGGCCTTGTATGAAATCTCAGAAGCTG
TGCATGTGACAGAGGATTTACTGGCACTATACCAACATATTCACCAAATTATGGCAAAGTTACTCCCTGCAGAGAATTTT
GCTATTGCACTTTATGATCAAGATTTACAAGAGCTTAGTTTTCCGTATCGGGTTAGCACCCAAGAAAACTCGGCTGTAGA
CATTGAAAGTTTTCGCGTATTTACTGAACAAGTGATCCAAAATGCAGAATCGATATTACTTTGCCCTATTAGCTTAAACG
AGTATCCAAAAGGCGCCGCAGCCGAGTTAGGTAATAGCCGTTTAAGCTGGCTTGGCGTACCGCTTAAGTTACAAAAAGGG
GTTATTGGTGCGTTAATGATGCATACCGACCCGACTTCTGCACCTTATACATATCAAGATTATGAGTTAGTTGAGTTTGT
TTCAACCCAAATAGCCTTTGCTATTGAACGTCGACAAATGCTAGCTCGCCTAGAGCATATTGCTTTGTATGATCAATTAA
CTCAATTACCGAATCGAGCGTTGTTTTACGATCGGTTCCAAAAAGCCCTATCTCGGGCTCATCGGGAAGGGAGTTATTTT
TCCTTACTGTATTTGGATCTTGATAAGTTTAAGTGGGTAAATGATACCTATGGACACAGTGTTGGGGATTTATTACTGCA
AGTGACAGCGCAGCGTATACTTGGCTGTGTGAGAGCCTCTGATACAGTTGCCCGTTTTGGTGGCGATGAATTTGTGATTT
TACTCGAACGAGTTGATTCTGCTAAAAATACCTTAGTAACGGCTCAAAAGATTTTACAAGTACTTAATCAACCCTTTGAG
CTTATTGATCAGCAAGTTCAAATATTACCTAGCATCGGCATTGCTATGTATCCGGAACATGGTATCGATGAGAAACAACT
GATTTCCTGTGCAGATACGGCTATGTATAAGGCCAAAAAGAACGGTGGTAATCGTATTGAGATGGCATATCAAGGTTTAA
GATCTATCTTTGTTGATACGATACTGCCGCTCGAGCTACACCCCACTAATGCTAAAAAAGTCATTTAA

Upstream 100 bases:

>100_bases
GGTTAAGCTAATTTGTAGGTTATTTAGATTTAAGTATATGTCTTAGTTAACTTTTTAGCCAATAAAGACACTTGCTTTCT
GGATGTCATTGGAGATCTGC

Downstream 100 bases:

>100_bases
CATTTGATGTTAAAGCATCAATTATTGGTTAATGAATAAGACTTAGTTATTAAAACTTAGTGATTAAAACAATGCCCGAT
AATGTTATCCATTGTCGGGC

Product: diguanylate cyclase with PAS/PAC sensor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 475; Mature: 475

Protein sequence:

>475_residues
MNNDEYTSLSQFIDLLLDAICVVDKTGRFEFVSAGAERIFGYTPEEMIGMQMLELVLPEDRERTLATAKEIMDGRFKVDF
ENRYVRKDGSIVDILWSARWSEDHQQRVAVARDITKRKNAERRQAALYEISEAVHVTEDLLALYQHIHQIMAKLLPAENF
AIALYDQDLQELSFPYRVSTQENSAVDIESFRVFTEQVIQNAESILLCPISLNEYPKGAAAELGNSRLSWLGVPLKLQKG
VIGALMMHTDPTSAPYTYQDYELVEFVSTQIAFAIERRQMLARLEHIALYDQLTQLPNRALFYDRFQKALSRAHREGSYF
SLLYLDLDKFKWVNDTYGHSVGDLLLQVTAQRILGCVRASDTVARFGGDEFVILLERVDSAKNTLVTAQKILQVLNQPFE
LIDQQVQILPSIGIAMYPEHGIDEKQLISCADTAMYKAKKNGGNRIEMAYQGLRSIFVDTILPLELHPTNAKKVI

Sequences:

>Translated_475_residues
MNNDEYTSLSQFIDLLLDAICVVDKTGRFEFVSAGAERIFGYTPEEMIGMQMLELVLPEDRERTLATAKEIMDGRFKVDF
ENRYVRKDGSIVDILWSARWSEDHQQRVAVARDITKRKNAERRQAALYEISEAVHVTEDLLALYQHIHQIMAKLLPAENF
AIALYDQDLQELSFPYRVSTQENSAVDIESFRVFTEQVIQNAESILLCPISLNEYPKGAAAELGNSRLSWLGVPLKLQKG
VIGALMMHTDPTSAPYTYQDYELVEFVSTQIAFAIERRQMLARLEHIALYDQLTQLPNRALFYDRFQKALSRAHREGSYF
SLLYLDLDKFKWVNDTYGHSVGDLLLQVTAQRILGCVRASDTVARFGGDEFVILLERVDSAKNTLVTAQKILQVLNQPFE
LIDQQVQILPSIGIAMYPEHGIDEKQLISCADTAMYKAKKNGGNRIEMAYQGLRSIFVDTILPLELHPTNAKKVI
>Mature_475_residues
MNNDEYTSLSQFIDLLLDAICVVDKTGRFEFVSAGAERIFGYTPEEMIGMQMLELVLPEDRERTLATAKEIMDGRFKVDF
ENRYVRKDGSIVDILWSARWSEDHQQRVAVARDITKRKNAERRQAALYEISEAVHVTEDLLALYQHIHQIMAKLLPAENF
AIALYDQDLQELSFPYRVSTQENSAVDIESFRVFTEQVIQNAESILLCPISLNEYPKGAAAELGNSRLSWLGVPLKLQKG
VIGALMMHTDPTSAPYTYQDYELVEFVSTQIAFAIERRQMLARLEHIALYDQLTQLPNRALFYDRFQKALSRAHREGSYF
SLLYLDLDKFKWVNDTYGHSVGDLLLQVTAQRILGCVRASDTVARFGGDEFVILLERVDSAKNTLVTAQKILQVLNQPFE
LIDQQVQILPSIGIAMYPEHGIDEKQLISCADTAMYKAKKNGGNRIEMAYQGLRSIFVDTILPLELHPTNAKKVI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=193, Percent_Identity=38.3419689119171, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI145693134, Length=160, Percent_Identity=40.625, Blast_Score=112, Evalue=6e-26,
Organism=Escherichia coli, GI1788381, Length=174, Percent_Identity=35.632183908046, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787262, Length=248, Percent_Identity=28.6290322580645, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87081881, Length=176, Percent_Identity=35.2272727272727, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1788956, Length=161, Percent_Identity=38.5093167701863, Blast_Score=92, Evalue=8e-20,
Organism=Escherichia coli, GI1786584, Length=189, Percent_Identity=31.2169312169312, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787816, Length=156, Percent_Identity=33.974358974359, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI87082007, Length=168, Percent_Identity=33.9285714285714, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787802, Length=170, Percent_Identity=33.5294117647059, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87081977, Length=245, Percent_Identity=24.4897959183673, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI87081974, Length=155, Percent_Identity=32.9032258064516, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788085, Length=162, Percent_Identity=28.3950617283951, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787056, Length=182, Percent_Identity=33.5164835164835, Blast_Score=66, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 54117; Mature: 54117

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNDEYTSLSQFIDLLLDAICVVDKTGRFEFVSAGAERIFGYTPEEMIGMQMLELVLPED
CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHCCCCHHHHHHHHHHHHHCCCC
RERTLATAKEIMDGRFKVDFENRYVRKDGSIVDILWSARWSEDHQQRVAVARDITKRKNA
HHHHHHHHHHHHCCCEEEEECCCEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCH
ERRQAALYEISEAVHVTEDLLALYQHIHQIMAKLLPAENFAIALYDQDLQELSFPYRVST
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHCCCCEEECC
QENSAVDIESFRVFTEQVIQNAESILLCPISLNEYPKGAAAELGNSRLSWLGVPLKLQKG
CCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHCCCCCHHHCCCCHHHHCC
VIGALMMHTDPTSAPYTYQDYELVEFVSTQIAFAIERRQMLARLEHIALYDQLTQLPNRA
HHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
LFYDRFQKALSRAHREGSYFSLLYLDLDKFKWVNDTYGHSVGDLLLQVTAQRILGCVRAS
HHHHHHHHHHHHHHCCCCEEEEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
DTVARFGGDEFVILLERVDSAKNTLVTAQKILQVLNQPFELIDQQVQILPSIGIAMYPEH
CHHHHCCCCCEEEEEEHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEECCCC
GIDEKQLISCADTAMYKAKKNGGNRIEMAYQGLRSIFVDTILPLELHPTNAKKVI
CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCEEECCCCCCCCC
>Mature Secondary Structure
MNNDEYTSLSQFIDLLLDAICVVDKTGRFEFVSAGAERIFGYTPEEMIGMQMLELVLPED
CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHCCCCHHHHHHHHHHHHHCCCC
RERTLATAKEIMDGRFKVDFENRYVRKDGSIVDILWSARWSEDHQQRVAVARDITKRKNA
HHHHHHHHHHHHCCCEEEEECCCEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCH
ERRQAALYEISEAVHVTEDLLALYQHIHQIMAKLLPAENFAIALYDQDLQELSFPYRVST
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHCCCCEEECC
QENSAVDIESFRVFTEQVIQNAESILLCPISLNEYPKGAAAELGNSRLSWLGVPLKLQKG
CCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHCCCCCHHHCCCCHHHHCC
VIGALMMHTDPTSAPYTYQDYELVEFVSTQIAFAIERRQMLARLEHIALYDQLTQLPNRA
HHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
LFYDRFQKALSRAHREGSYFSLLYLDLDKFKWVNDTYGHSVGDLLLQVTAQRILGCVRAS
HHHHHHHHHHHHHHCCCCEEEEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
DTVARFGGDEFVILLERVDSAKNTLVTAQKILQVLNQPFELIDQQVQILPSIGIAMYPEH
CHHHHCCCCCEEEEEEHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEECCCC
GIDEKQLISCADTAMYKAKKNGGNRIEMAYQGLRSIFVDTILPLELHPTNAKKVI
CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]