| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597667
Identifier: 120597667
GI number: 120597667
Start: 942151
End: 943191
Strand: Direct
Name: 120597667
Synonym: Sputw3181_0837
Alternate gene names: NA
Gene position: 942151-943191 (Clockwise)
Preceding gene: 120597665
Following gene: 120597668
Centisome position: 20.01
GC content: 45.73
Gene sequence:
>1041_bases ATGACAGCGATACAGCATATTGAACGCCTTGCACGAGGGCGAAGTGAGCAGGCCGTTGCCGTCATTAAAAACGTGCAGCA GATGTCCAATATTCCTACGCATGAAATGCAGTTAGCACTTAAGCAATTAGTAAGCTGTGGCCGTGTCGCGTTACATTTTC ATCCCGATAGAATTGATAGCCGCGGCATGACGGTAGCCGAAGGCTTGCTCCGAGATGGTCAATATCGCAGCCAGTTCGAG ACTCATATTTCTAATGGTCAGTTATCCCCTGAATTAGGTGGCCCACGGGATCATTGGGAAAACCAACTCTTTGGCAATGT GTATAAAGGAACAAAATCCCGACCTAAATATGGCGCCTTAGATTTGAGCATGTGGCAGGATGGCCCAGCTCCTCGCTTTG GCAGTTGTTATTTATTGACTCATACAGAAGTGATGTCTCGGGCTACCTTTTCCTACCTTGACTCATATCGCAATCCAAAG GAGAAGGGAACTTTAGGTTGTTTTGAGGATATTTTAGCAGCGCTGTTAACGGAAAGCTTTGAGCGTCACTATGCCTTAGG CAAAACTGACTTCAAGCCGCTGAATGTGATCCATTATTTGGGGCATCAACTCAATGCTTCTTTGATGTCACGGTTTGAGC GGCCACTATCAAGTAACCTCGATCATTATATTGAAGCGCAGATCCACGGTGATGTATCACTCGATGAGGATATCGCCATG CTGGTGGCTGATCCGAGTTTTAAGGGGACGGATATTGGCGACACTTTGAGTAAAATGTGTGATAGGTATGATATTGAACT GCAATATCACCAAGGTTTTAGCTTACATACGGAACAAATCCCAAGTGATTTTCGTGGCCCTACTATGCCATCACTCGCTC AGTGTATTGCGATAGAAGATAGGGTTAATGCCTATGCTATTGGTGTTGCTGCGAGGGATTTATATCATTTCCCCCAACAT TGGCGTGAACGCGGAAATCGCGCTCTGGTCGCCCATGAACTCAAATTGCTTTGGCATGTGTTAGTAAAATACGGTGCTTA A
Upstream 100 bases:
>100_bases GTGAGATAGGGCTTGAGGTTGTGTTTCTTGATTGCCAAGCCATTTTACTTTTAGGATGGGATTTTCTTGAGTTGATTATA CGCCTCATTACAGGTGAACT
Downstream 100 bases:
>100_bases TTTGTAAATTGTTAAATTATTTCGTTTTTGTGAATCGGTTAACAAAAGCCTCCTACAGGGTTTCATCTATTGCGGATGCC TGCGATACTGCGTTCCTATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 346; Mature: 345
Protein sequence:
>346_residues MTAIQHIERLARGRSEQAVAVIKNVQQMSNIPTHEMQLALKQLVSCGRVALHFHPDRIDSRGMTVAEGLLRDGQYRSQFE THISNGQLSPELGGPRDHWENQLFGNVYKGTKSRPKYGALDLSMWQDGPAPRFGSCYLLTHTEVMSRATFSYLDSYRNPK EKGTLGCFEDILAALLTESFERHYALGKTDFKPLNVIHYLGHQLNASLMSRFERPLSSNLDHYIEAQIHGDVSLDEDIAM LVADPSFKGTDIGDTLSKMCDRYDIELQYHQGFSLHTEQIPSDFRGPTMPSLAQCIAIEDRVNAYAIGVAARDLYHFPQH WRERGNRALVAHELKLLWHVLVKYGA
Sequences:
>Translated_346_residues MTAIQHIERLARGRSEQAVAVIKNVQQMSNIPTHEMQLALKQLVSCGRVALHFHPDRIDSRGMTVAEGLLRDGQYRSQFE THISNGQLSPELGGPRDHWENQLFGNVYKGTKSRPKYGALDLSMWQDGPAPRFGSCYLLTHTEVMSRATFSYLDSYRNPK EKGTLGCFEDILAALLTESFERHYALGKTDFKPLNVIHYLGHQLNASLMSRFERPLSSNLDHYIEAQIHGDVSLDEDIAM LVADPSFKGTDIGDTLSKMCDRYDIELQYHQGFSLHTEQIPSDFRGPTMPSLAQCIAIEDRVNAYAIGVAARDLYHFPQH WRERGNRALVAHELKLLWHVLVKYGA >Mature_345_residues TAIQHIERLARGRSEQAVAVIKNVQQMSNIPTHEMQLALKQLVSCGRVALHFHPDRIDSRGMTVAEGLLRDGQYRSQFET HISNGQLSPELGGPRDHWENQLFGNVYKGTKSRPKYGALDLSMWQDGPAPRFGSCYLLTHTEVMSRATFSYLDSYRNPKE KGTLGCFEDILAALLTESFERHYALGKTDFKPLNVIHYLGHQLNASLMSRFERPLSSNLDHYIEAQIHGDVSLDEDIAML VADPSFKGTDIGDTLSKMCDRYDIELQYHQGFSLHTEQIPSDFRGPTMPSLAQCIAIEDRVNAYAIGVAARDLYHFPQHW RERGNRALVAHELKLLWHVLVKYGA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39224; Mature: 39093
Theoretical pI: Translated: 6.90; Mature: 6.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAIQHIERLARGRSEQAVAVIKNVQQMSNIPTHEMQLALKQLVSCGRVALHFHPDRIDS CCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCC RGMTVAEGLLRDGQYRSQFETHISNGQLSPELGGPRDHWENQLFGNVYKGTKSRPKYGAL CCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCE DLSMWQDGPAPRFGSCYLLTHTEVMSRATFSYLDSYRNPKEKGTLGCFEDILAALLTESF EHECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH ERHYALGKTDFKPLNVIHYLGHQLNASLMSRFERPLSSNLDHYIEAQIHGDVSLDEDIAM HHHHHCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEE LVADPSFKGTDIGDTLSKMCDRYDIELQYHQGFSLHTEQIPSDFRGPTMPSLAQCIAIED EEECCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCHHHCCCCCCCCCCHHHHHHHHHHH RVNAYAIGVAARDLYHFPQHWRERGNRALVAHELKLLWHVLVKYGA CCCEEEEHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TAIQHIERLARGRSEQAVAVIKNVQQMSNIPTHEMQLALKQLVSCGRVALHFHPDRIDS CHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCC RGMTVAEGLLRDGQYRSQFETHISNGQLSPELGGPRDHWENQLFGNVYKGTKSRPKYGAL CCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCE DLSMWQDGPAPRFGSCYLLTHTEVMSRATFSYLDSYRNPKEKGTLGCFEDILAALLTESF EHECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH ERHYALGKTDFKPLNVIHYLGHQLNASLMSRFERPLSSNLDHYIEAQIHGDVSLDEDIAM HHHHHCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEE LVADPSFKGTDIGDTLSKMCDRYDIELQYHQGFSLHTEQIPSDFRGPTMPSLAQCIAIED EEECCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCHHHCCCCCCCCCCHHHHHHHHHHH RVNAYAIGVAARDLYHFPQHWRERGNRALVAHELKLLWHVLVKYGA CCCEEEEHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA