| Definition | Shewanella sp. W3-18-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008750 |
| Length | 4,708,380 |
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The map label for this gene is 120597155
Identifier: 120597155
GI number: 120597155
Start: 352755
End: 353414
Strand: Direct
Name: 120597155
Synonym: Sputw3181_0324
Alternate gene names: NA
Gene position: 352755-353414 (Clockwise)
Preceding gene: 120597154
Following gene: 120597156
Centisome position: 7.49
GC content: 43.18
Gene sequence:
>660_bases ATGGACTTCTTTGAATATTGGAACTCTTGCCTAGCAATGGGACTGACTAAGCACCCTGATGATCTAGTAGTGCTTGATGA GCTTCATCATGATTTAAATAAAGCCATTGATTGCGAGTTTGAATTTGGCTTGCCACCGGGGCCTTTCTTTGGCCCTTTAA AAACAGCGAAAATCGTGTTGTGCTACGCCAATCCTAGCCGTGATGAAAGCACTGCTGAGGTTGTCGCATCGACAGCATTG AAAGAGCGGTTGTTTGCTCAACTTGATGGTTTACAGTCTTATCCTTATCAGATACCGGGTTGGGATAAATGGTTTAAGCC AGTTGCCAATAGTTTGTTTGATGGGAATTGTGAACTGGCATCAAAGCATATCAGTGTGTTTAATTTAGTCCCTTATGCCT CTACCAATATGGACCAAGTACAAAGTTTTGCCACCAGCTTGCCAAGTGTTTGGGCGGCACAAGAATACCTGAGGCGGACA CTAATCCCGCAAGCTTTGAGAGAAGAAATTCTGTTGGTGATGTGCCGTTCTTCTCAATTGTGGGGGCTACAGACACCTCA TAGGGCTAACAATATCGTGATTAACAAAACACGAATAGGATTTACCGATGACACCAAGATGCAGGTTAAATTATGGTGCC GACAAATCGGAATTAATTAA
Upstream 100 bases:
>100_bases AGGAAATGCAAAGAAAAAATAGCCACTCTTTTCCTTAATTCGGGATGTCGAGATTAAGGAATGTCACCTTGGTGGTTAAG TTTTTAAGGATGGATAGAGC
Downstream 100 bases:
>100_bases CGTTTTACTCGGTGTGGATTCTGGAGTTTTAAAAGGCCGTTGGCTCAACTTTTTATCAGACTAATGATTCAAATGGAGGT GGAGGATGGCGTTCGTTAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 219; Mature: 219
Protein sequence:
>219_residues MDFFEYWNSCLAMGLTKHPDDLVVLDELHHDLNKAIDCEFEFGLPPGPFFGPLKTAKIVLCYANPSRDESTAEVVASTAL KERLFAQLDGLQSYPYQIPGWDKWFKPVANSLFDGNCELASKHISVFNLVPYASTNMDQVQSFATSLPSVWAAQEYLRRT LIPQALREEILLVMCRSSQLWGLQTPHRANNIVINKTRIGFTDDTKMQVKLWCRQIGIN
Sequences:
>Translated_219_residues MDFFEYWNSCLAMGLTKHPDDLVVLDELHHDLNKAIDCEFEFGLPPGPFFGPLKTAKIVLCYANPSRDESTAEVVASTAL KERLFAQLDGLQSYPYQIPGWDKWFKPVANSLFDGNCELASKHISVFNLVPYASTNMDQVQSFATSLPSVWAAQEYLRRT LIPQALREEILLVMCRSSQLWGLQTPHRANNIVINKTRIGFTDDTKMQVKLWCRQIGIN >Mature_219_residues MDFFEYWNSCLAMGLTKHPDDLVVLDELHHDLNKAIDCEFEFGLPPGPFFGPLKTAKIVLCYANPSRDESTAEVVASTAL KERLFAQLDGLQSYPYQIPGWDKWFKPVANSLFDGNCELASKHISVFNLVPYASTNMDQVQSFATSLPSVWAAQEYLRRT LIPQALREEILLVMCRSSQLWGLQTPHRANNIVINKTRIGFTDDTKMQVKLWCRQIGIN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24902; Mature: 24902
Theoretical pI: Translated: 6.01; Mature: 6.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDFFEYWNSCLAMGLTKHPDDLVVLDELHHDLNKAIDCEFEFGLPPGPFFGPLKTAKIVL CCHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCEEEEE CYANPSRDESTAEVVASTALKERLFAQLDGLQSYPYQIPGWDKWFKPVANSLFDGNCELA EECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHH SKHISVFNLVPYASTNMDQVQSFATSLPSVWAAQEYLRRTLIPQALREEILLVMCRSSQL HHHHHHHEECCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC WGLQTPHRANNIVINKTRIGFTDDTKMQVKLWCRQIGIN CCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure MDFFEYWNSCLAMGLTKHPDDLVVLDELHHDLNKAIDCEFEFGLPPGPFFGPLKTAKIVL CCHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCEEEEE CYANPSRDESTAEVVASTALKERLFAQLDGLQSYPYQIPGWDKWFKPVANSLFDGNCELA EECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHH SKHISVFNLVPYASTNMDQVQSFATSLPSVWAAQEYLRRTLIPQALREEILLVMCRSSQL HHHHHHHEECCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC WGLQTPHRANNIVINKTRIGFTDDTKMQVKLWCRQIGIN CCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA