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The map label for this gene is rbn

Identifier: 120597103

GI number: 120597103

Start: 298927

End: 299811

Strand: Direct

Name: rbn

Synonym: Sputw3181_0272

Alternate gene names: 120597103

Gene position: 298927-299811 (Clockwise)

Preceding gene: 120597100

Following gene: 120597104

Centisome position: 6.35

GC content: 43.28

Gene sequence:

>885_bases
GTGACTAAGAAGATAGAAGTAGCACAAATTCGAGTCTTATTCCTTGGGATCTGGCGCTTTTTACAGCATTTAAGGCTGCG
CTTAGTGGAAGATCAAATCAATATTCGGGCGGGACATTTAGCCTATGTCACTTTGCTATCACTTGTTCCTTTGGTGGCGG
TGACTATGTCTATGCTATCGGCCTTCCCTGTATTTAAGGGAATACGTGGACAGATTGAAGCCTTTGTTTATGAGAACTTT
CTCCCCGCTGCTGGCGATACAGTGCAAATCTATATCAATGAATTTGTAGGAAATGCTTCTAAGGGCACCGCAGTCGGTAT
TGCGGCACTTGTTGTGGTGGCGATTATGCTGATTTCCGCTATCGATAAGTCGCTTAATAATATCTGGCGCACTAAAGAGA
AGCGTTCTGTGGTGGTGGCTTTTTCAATGTACTGGATGGTGATCACGCTTGGCCCTGTTTTGGTTGGTGCAAGTTTGGTG
GCGACCTCCTATGTTGTTTCGTTAAAACTGTTTGAAGATGATACTTTTTCTGGTGTTGTCCCTCTGTTTATTGAGCGTTT
ACCTATGCTGTTTTCTGTCGCAGCATTTCTGTTGTTATACATGGTCGTACCCAATCAAAAGGTGAAGTTTTTACATGCAT
TATTAGGGGCACTAGTCGCAGCGCTGCTGTTTGAGTTAGGGAAAAAAGCTTTTGCTTTGTATGTCACTCAGTTCCCAAGT
TATGAGGCTATTTATGGTGCCTTAGCAACAATTCCTATCTTATTTGTGTGGGTGTATCTGTCATGGATGATTGTATTACT
GGGGGCAGAAATTACCGCGGCTATGCCCGAGTATCTCGATTATGAATCGAGTTTCGATAAGGACGAAGCGAGTACGAAAA
CTTAA

Upstream 100 bases:

>100_bases
CGGATCCTTGTTGAGACATCAATTCACTCCTTAGACTTGTAAATTAAGTGTTTATTGTACGAAGATAACGAGTCTATACC
AACAGAATCAAGAGAAACCC

Downstream 100 bases:

>100_bases
GTTTTTGCCGATTAATTGCGGTAATAGGTTTTATGTTGGCAATATAACCATATCAATATAAAGGAAAAGTTGTGATAGCG
TTAATTCAAAGAGTGAGCCG

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MTKKIEVAQIRVLFLGIWRFLQHLRLRLVEDQINIRAGHLAYVTLLSLVPLVAVTMSMLSAFPVFKGIRGQIEAFVYENF
LPAAGDTVQIYINEFVGNASKGTAVGIAALVVVAIMLISAIDKSLNNIWRTKEKRSVVVAFSMYWMVITLGPVLVGASLV
ATSYVVSLKLFEDDTFSGVVPLFIERLPMLFSVAAFLLLYMVVPNQKVKFLHALLGALVAALLFELGKKAFALYVTQFPS
YEAIYGALATIPILFVWVYLSWMIVLLGAEITAAMPEYLDYESSFDKDEASTKT

Sequences:

>Translated_294_residues
MTKKIEVAQIRVLFLGIWRFLQHLRLRLVEDQINIRAGHLAYVTLLSLVPLVAVTMSMLSAFPVFKGIRGQIEAFVYENF
LPAAGDTVQIYINEFVGNASKGTAVGIAALVVVAIMLISAIDKSLNNIWRTKEKRSVVVAFSMYWMVITLGPVLVGASLV
ATSYVVSLKLFEDDTFSGVVPLFIERLPMLFSVAAFLLLYMVVPNQKVKFLHALLGALVAALLFELGKKAFALYVTQFPS
YEAIYGALATIPILFVWVYLSWMIVLLGAEITAAMPEYLDYESSFDKDEASTKT
>Mature_293_residues
TKKIEVAQIRVLFLGIWRFLQHLRLRLVEDQINIRAGHLAYVTLLSLVPLVAVTMSMLSAFPVFKGIRGQIEAFVYENFL
PAAGDTVQIYINEFVGNASKGTAVGIAALVVVAIMLISAIDKSLNNIWRTKEKRSVVVAFSMYWMVITLGPVLVGASLVA
TSYVVSLKLFEDDTFSGVVPLFIERLPMLFSVAAFLLLYMVVPNQKVKFLHALLGALVAALLFELGKKAFALYVTQFPSY
EAIYGALATIPILFVWVYLSWMIVLLGAEITAAMPEYLDYESSFDKDEASTKT

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

Organism=Escherichia coli, GI1790319, Length=273, Percent_Identity=50.1831501831502, Blast_Score=275, Evalue=2e-75,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 32621; Mature: 32490

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TKKIEVAQIRVLFLGIWRFLQHLRLRLVEDQINIRAGHLAYVTLLSLVPLVAVTMSMLS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
AFPVFKGIRGQIEAFVYENFLPAAGDTVQIYINEFVGNASKGTAVGIAALVVVAIMLISA
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHHHH
IDKSLNNIWRTKEKRSVVVAFSMYWMVITLGPVLVGASLVATSYVVSLKLFEDDTFSGVV
HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHH
PLFIERLPMLFSVAAFLLLYMVVPNQKVKFLHALLGALVAALLFELGKKAFALYVTQFPS
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCC
YEAIYGALATIPILFVWVYLSWMIVLLGAEITAAMPEYLDYESSFDKDEASTKT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA