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The map label for this gene is ccmH [H]

Identifier: 120597025

GI number: 120597025

Start: 212289

End: 212768

Strand: Direct

Name: ccmH [H]

Synonym: Sputw3181_0193

Alternate gene names: 120597025

Gene position: 212289-212768 (Clockwise)

Preceding gene: 120597024

Following gene: 120597026

Centisome position: 4.51

GC content: 40.42

Gene sequence:

>480_bases
GTGAAAATATTACTCAAATTAGTAAGCGGGTTAGTGCTGGTATTGAGTATGGTCACTAGTGCTATTGCTACACCTGTCGA
TACTTATGAATTTAAATCGCCGGATAATCAAAAGCGCGCTTTATCACTCGCTCACTCTTTGCGTTGTCCGCAGTGTCAAA
ACCAAAACTTAATTGATTCGAATTCTCCAGTTGCCAGTGATTTGCGGCTGGAAGTTTTTAAAATGGTCGATGAAGGTAAA
GGCGATGATGAAATCATTGAGTTTATGACAAGTCGCTATGGTGAGTTTGTGCTGTATAAACCTAAAATGGAAGCCAAAAC
CTATATACTTTGGTTAGGGCCCATAGGTTTGTTAATCATCGGCTTAGCGATTGGTTATATTTTTATCCGCAAACAGCGCA
TCAGTGGCAACACACCTCAGGAGATCAGCGCTGAAGATCAACAAGCATTAGATGCCTTACTAAAGCGTAATAGCAAATGA

Upstream 100 bases:

>100_bases
GCTTCCGCTATGCAGGCCCTATTGATCAAAATGTCTGGAGTGAAACACTATTCCCAATGATCCAGCAATTACAGGCAGAA
GCAGCAAAGGATAATGTATC

Downstream 100 bases:

>100_bases
AGCATAAATTAGCGATAGCGTTCATGCTGTCATCTATTTTATTAGGATTTACAGTTGGAGTTGTGCATGCCTATCCTGGG
ATGCAACAGGGAACAAATCC

Product: cytochrome C biogenesis protein

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CycL [H]

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MKILLKLVSGLVLVLSMVTSAIATPVDTYEFKSPDNQKRALSLAHSLRCPQCQNQNLIDSNSPVASDLRLEVFKMVDEGK
GDDEIIEFMTSRYGEFVLYKPKMEAKTYILWLGPIGLLIIGLAIGYIFIRKQRISGNTPQEISAEDQQALDALLKRNSK

Sequences:

>Translated_159_residues
MKILLKLVSGLVLVLSMVTSAIATPVDTYEFKSPDNQKRALSLAHSLRCPQCQNQNLIDSNSPVASDLRLEVFKMVDEGK
GDDEIIEFMTSRYGEFVLYKPKMEAKTYILWLGPIGLLIIGLAIGYIFIRKQRISGNTPQEISAEDQQALDALLKRNSK
>Mature_159_residues
MKILLKLVSGLVLVLSMVTSAIATPVDTYEFKSPDNQKRALSLAHSLRCPQCQNQNLIDSNSPVASDLRLEVFKMVDEGK
GDDEIIEFMTSRYGEFVLYKPKMEAKTYILWLGPIGLLIIGLAIGYIFIRKQRISGNTPQEISAEDQQALDALLKRNSK

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

Organism=Escherichia coli, GI1790512, Length=87, Percent_Identity=54.0229885057471, Blast_Score=103, Evalue=5e-24,
Organism=Escherichia coli, GI1788522, Length=115, Percent_Identity=40.8695652173913, Blast_Score=100, Evalue=8e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 17790; Mature: 17790

Theoretical pI: Translated: 8.19; Mature: 8.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILLKLVSGLVLVLSMVTSAIATPVDTYEFKSPDNQKRALSLAHSLRCPQCQNQNLIDS
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
NSPVASDLRLEVFKMVDEGKGDDEIIEFMTSRYGEFVLYKPKMEAKTYILWLGPIGLLII
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHHHH
GLAIGYIFIRKQRISGNTPQEISAEDQQALDALLKRNSK
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKILLKLVSGLVLVLSMVTSAIATPVDTYEFKSPDNQKRALSLAHSLRCPQCQNQNLIDS
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
NSPVASDLRLEVFKMVDEGKGDDEIIEFMTSRYGEFVLYKPKMEAKTYILWLGPIGLLII
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHHHH
GLAIGYIFIRKQRISGNTPQEISAEDQQALDALLKRNSK
HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA