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The map label for this gene is ccmF [H]

Identifier: 120597023

GI number: 120597023

Start: 209747

End: 211726

Strand: Direct

Name: ccmF [H]

Synonym: Sputw3181_0191

Alternate gene names: 120597023

Gene position: 209747-211726 (Clockwise)

Preceding gene: 120597021

Following gene: 120597024

Centisome position: 4.45

GC content: 44.6

Gene sequence:

>1980_bases
ATGATCCCAGAACTTGGACACTTTTCGTTGATAATCGGAGTGGCTTTTGCCTTTCTGCTCGTCAGCGTTCCCCTTATTGG
TGTTGCCCGTAAAGATCAATATCTTGTGAGGTATGCTTGGCCGTTAGCTTACGGAATGTTCTTTTTTATCAGTTTATCCG
TTGTTTCACTTGGTTATAGCTTTGCTGTTGATGATTTCTCCGTCGCTTATGTGGCTCATCACTCTAACTCCCAGTTACCT
ATCTTCTTTAAGATTGCGGCCGTATGGGGCGGTCACGAAGGGTCGCTGCTATTTTGGGTGTTTTCATTAGCAACTTGGGC
CGCTTCTGTTGCTTTATTCAGTAAAGGTTTAGAAGAAGTGTTCACCGCACGTGTACTTGCAGTTCTGGCAGTAATCGTGA
TTGGTTTTAGTTTGTTTATGTTGCTCACATCAAGCCCATTTGAGCGTTTATTCCCCATGCCTGCAGAAGGTCGTGACTTA
AACCCAATGCTGCAGGATGTGGGCTTAATATTCCATCCACCTATGCTGTATTTGGGCTATGTTGGTTTTTCTGTAAGCTT
TGCTTTTGCTATTGCGGCATTGATGAGTGGACGTCTTGATTCTGCATGGGCTCGTTGGTCTCGTCCTTGGACCTTGGCTG
CATGGGTATTCCTCACGGGCGGTATTTCTTTAGGCTCTTGGTGGGCATATTACGAATTAGGCTGGGGTGGTTGGTGGTTC
TGGGATCCTGTTGAGAATGCCTCTTTCATGCCTTGGTTAGTGGGTACTGCGCTTGTGCACTCTTTGATTGTGACCGAGAA
ACGCGGTGCCTTCCGTAACTGGACGGTATTGCTTTCCATCTTTGCTTTCTCTTTAAGCTTGCTTGGTACCTTTATTGTTC
GCTCTGGCGTATTAACCTCAGTGCATTCATTTGCGGCAGATCCAAGCCGTGGTATGTTCATTCTGTTGTTACTTGGTTTA
GCCATTGGTGGTTCTTTAACACTCTTTGCTTTCCGTGCCAGCGAAATGAGTAGCCCAGCACGTTTCGAGTTGAAGTCTAA
AGAAACTATGCTGCTGATTTGTAACGTTCTGTTGACTGTTGCTACAGGTACTGTGTTATTAGGCACTTTATACCCACTGC
TGATTGATGCACTTGGTATGGGTAAAATTTCTGTAGGGCCTCCATATTTCAATGCTGTATTTGTGCCTATCGTTTTAGTG
TTGTTTGCTTTTATGGGTGTAGGTCCAATTATTCGCTGGAAAAAATCGAAGGCTGGCGAGCTTAGACGCCAACTACTGAT
CCCAGCTCTAATTTCTGTCGCGATAGGGATAGTGACACCATTTATAGTTGATGGTGCATTTAACGCGTGGGTTGCATTTG
GTATTGCAGCGGCGGTATGGATCATACTTGCTACGGCAAGAGCCGCTTATAATATTGTTAAACCTAAAGAAGGTGATATT
AGTGTTGCTCGTATGGGGCGCAGTCAATTTGGGATGATCTTGGCCCACTTCGGCATTGCCGTCTCTGTTATTGGTGCCAC
TATGGTATCTAACTATTCAGTTGAGAAAAGTGTCCGTATGGGACCAGGGGTTAGTCAAGAGTTAGCTGGTTATACCTTTA
AGTATTTAGAGACAAAAAATGTCGTTGGCCCAAATTACACAGCTCAGCAGGGGCAAATTGAAATCTATAAAGATGACAAA
TTGTTAACACTGCTAAAGCCTGATCGCCGTCAATACAATGTACGAACCATGGATATGACCGAAGCTGGTATTGATTGGGG
TCTGTTCCGTGATTTGTATGTGACTATGGGTGACCCTATCAGTGCAACAGAGTTTGCGGTACGTTTGAACTATAAACCCT
TTGTCCGTTGGTTGTGGTTTGGATCGATTTTTATGATGATTGGTGGTTTCTTCGCTGCATCAGATAAGCGTTATCGCTCA
AAAGTGGCGGCGATTGTTAAGCCACAAGTAGATAAAGCTAAACTGGCAACCGCTCAATAG

Upstream 100 bases:

>100_bases
CTAAAATGAACCAAATCTTGTACGTTTGTGTGAATAACATGTTGTGCGTTGATGTAGAGTCGTTCTAGATCAACATATTA
TTAGAGACTGAGGAAAACCC

Downstream 100 bases:

>100_bases
TTGAGGAATATATGAAGAAGTTAGTTCTATTTATCCCTCTGGTGCTATTTCTTGCCATGGGAGTATTTTTATATAAAGGG
TTGTTTTTGAATCCTCAAAA

Product: cytochrome c-type biogenesis protein CcmF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 659; Mature: 659

Protein sequence:

>659_residues
MIPELGHFSLIIGVAFAFLLVSVPLIGVARKDQYLVRYAWPLAYGMFFFISLSVVSLGYSFAVDDFSVAYVAHHSNSQLP
IFFKIAAVWGGHEGSLLFWVFSLATWAASVALFSKGLEEVFTARVLAVLAVIVIGFSLFMLLTSSPFERLFPMPAEGRDL
NPMLQDVGLIFHPPMLYLGYVGFSVSFAFAIAALMSGRLDSAWARWSRPWTLAAWVFLTGGISLGSWWAYYELGWGGWWF
WDPVENASFMPWLVGTALVHSLIVTEKRGAFRNWTVLLSIFAFSLSLLGTFIVRSGVLTSVHSFAADPSRGMFILLLLGL
AIGGSLTLFAFRASEMSSPARFELKSKETMLLICNVLLTVATGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIVLV
LFAFMGVGPIIRWKKSKAGELRRQLLIPALISVAIGIVTPFIVDGAFNAWVAFGIAAAVWIILATARAAYNIVKPKEGDI
SVARMGRSQFGMILAHFGIAVSVIGATMVSNYSVEKSVRMGPGVSQELAGYTFKYLETKNVVGPNYTAQQGQIEIYKDDK
LLTLLKPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGDPISATEFAVRLNYKPFVRWLWFGSIFMMIGGFFAASDKRYRS
KVAAIVKPQVDKAKLATAQ

Sequences:

>Translated_659_residues
MIPELGHFSLIIGVAFAFLLVSVPLIGVARKDQYLVRYAWPLAYGMFFFISLSVVSLGYSFAVDDFSVAYVAHHSNSQLP
IFFKIAAVWGGHEGSLLFWVFSLATWAASVALFSKGLEEVFTARVLAVLAVIVIGFSLFMLLTSSPFERLFPMPAEGRDL
NPMLQDVGLIFHPPMLYLGYVGFSVSFAFAIAALMSGRLDSAWARWSRPWTLAAWVFLTGGISLGSWWAYYELGWGGWWF
WDPVENASFMPWLVGTALVHSLIVTEKRGAFRNWTVLLSIFAFSLSLLGTFIVRSGVLTSVHSFAADPSRGMFILLLLGL
AIGGSLTLFAFRASEMSSPARFELKSKETMLLICNVLLTVATGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIVLV
LFAFMGVGPIIRWKKSKAGELRRQLLIPALISVAIGIVTPFIVDGAFNAWVAFGIAAAVWIILATARAAYNIVKPKEGDI
SVARMGRSQFGMILAHFGIAVSVIGATMVSNYSVEKSVRMGPGVSQELAGYTFKYLETKNVVGPNYTAQQGQIEIYKDDK
LLTLLKPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGDPISATEFAVRLNYKPFVRWLWFGSIFMMIGGFFAASDKRYRS
KVAAIVKPQVDKAKLATAQ
>Mature_659_residues
MIPELGHFSLIIGVAFAFLLVSVPLIGVARKDQYLVRYAWPLAYGMFFFISLSVVSLGYSFAVDDFSVAYVAHHSNSQLP
IFFKIAAVWGGHEGSLLFWVFSLATWAASVALFSKGLEEVFTARVLAVLAVIVIGFSLFMLLTSSPFERLFPMPAEGRDL
NPMLQDVGLIFHPPMLYLGYVGFSVSFAFAIAALMSGRLDSAWARWSRPWTLAAWVFLTGGISLGSWWAYYELGWGGWWF
WDPVENASFMPWLVGTALVHSLIVTEKRGAFRNWTVLLSIFAFSLSLLGTFIVRSGVLTSVHSFAADPSRGMFILLLLGL
AIGGSLTLFAFRASEMSSPARFELKSKETMLLICNVLLTVATGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIVLV
LFAFMGVGPIIRWKKSKAGELRRQLLIPALISVAIGIVTPFIVDGAFNAWVAFGIAAAVWIILATARAAYNIVKPKEGDI
SVARMGRSQFGMILAHFGIAVSVIGATMVSNYSVEKSVRMGPGVSQELAGYTFKYLETKNVVGPNYTAQQGQIEIYKDDK
LLTLLKPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGDPISATEFAVRLNYKPFVRWLWFGSIFMMIGGFFAASDKRYRS
KVAAIVKPQVDKAKLATAQ

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=645, Percent_Identity=49.922480620155, Blast_Score=605, Evalue=1e-174,
Organism=Escherichia coli, GI1790511, Length=590, Percent_Identity=37.9661016949153, Blast_Score=332, Evalue=7e-92,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 72643; Mature: 72643

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPELGHFSLIIGVAFAFLLVSVPLIGVARKDQYLVRYAWPLAYGMFFFISLSVVSLGYS
CCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCC
FAVDDFSVAYVAHHSNSQLPIFFKIAAVWGGHEGSLLFWVFSLATWAASVALFSKGLEEV
EEECCCEEEEEEECCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FTARVLAVLAVIVIGFSLFMLLTSSPFERLFPMPAEGRDLNPMLQDVGLIFHPPMLYLGY
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHCCHHCCCHHHHHHH
VGFSVSFAFAIAALMSGRLDSAWARWSRPWTLAAWVFLTGGISLGSWWAYYELGWGGWWF
HHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCEEE
WDPVENASFMPWLVGTALVHSLIVTEKRGAFRNWTVLLSIFAFSLSLLGTFIVRSGVLTS
ECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHSFAADPSRGMFILLLLGLAIGGSLTLFAFRASEMSSPARFELKSKETMLLICNVLLTV
HHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEECCCCHHHHHHHHHHHH
ATGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIVLVLFAFMGVGPIIRWKKSKAGE
HHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHH
LRRQLLIPALISVAIGIVTPFIVDGAFNAWVAFGIAAAVWIILATARAAYNIVKPKEGDI
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
SVARMGRSQFGMILAHFGIAVSVIGATMVSNYSVEKSVRMGPGVSQELAGYTFKYLETKN
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHCCCEEEEEEECC
VVGPNYTAQQGQIEIYKDDKLLTLLKPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGDPI
CCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCEEEEECHHCCCCHHHHHHHHHCCCCCC
SATEFAVRLNYKPFVRWLWFGSIFMMIGGFFAASDKRYRSKVAAIVKPQVDKAKLATAQ
CCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHCCCCC
>Mature Secondary Structure
MIPELGHFSLIIGVAFAFLLVSVPLIGVARKDQYLVRYAWPLAYGMFFFISLSVVSLGYS
CCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCC
FAVDDFSVAYVAHHSNSQLPIFFKIAAVWGGHEGSLLFWVFSLATWAASVALFSKGLEEV
EEECCCEEEEEEECCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FTARVLAVLAVIVIGFSLFMLLTSSPFERLFPMPAEGRDLNPMLQDVGLIFHPPMLYLGY
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHCCHHCCCHHHHHHH
VGFSVSFAFAIAALMSGRLDSAWARWSRPWTLAAWVFLTGGISLGSWWAYYELGWGGWWF
HHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCEEE
WDPVENASFMPWLVGTALVHSLIVTEKRGAFRNWTVLLSIFAFSLSLLGTFIVRSGVLTS
ECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHSFAADPSRGMFILLLLGLAIGGSLTLFAFRASEMSSPARFELKSKETMLLICNVLLTV
HHHHCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEECCCCHHHHHHHHHHHH
ATGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIVLVLFAFMGVGPIIRWKKSKAGE
HHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHH
LRRQLLIPALISVAIGIVTPFIVDGAFNAWVAFGIAAAVWIILATARAAYNIVKPKEGDI
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
SVARMGRSQFGMILAHFGIAVSVIGATMVSNYSVEKSVRMGPGVSQELAGYTFKYLETKN
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHCCCEEEEEEECC
VVGPNYTAQQGQIEIYKDDKLLTLLKPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGDPI
CCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCEEEEECHHCCCCHHHHHHHHHCCCCCC
SATEFAVRLNYKPFVRWLWFGSIFMMIGGFFAASDKRYRSKVAAIVKPQVDKAKLATAQ
CCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]