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The map label for this gene is yrdD [H]

Identifier: 120596861

GI number: 120596861

Start: 33519

End: 34088

Strand: Direct

Name: yrdD [H]

Synonym: Sputw3181_0028

Alternate gene names: 120596861

Gene position: 33519-34088 (Clockwise)

Preceding gene: 120596860

Following gene: 120596862

Centisome position: 0.71

GC content: 44.21

Gene sequence:

>570_bases
ATGATTATGTCTAAGATTGATGAACAATTATTTAGTGCCCACGAACACGCACTGGAAAAAGAATACGAACTTTGCCCTGA
ATGTGGCAGCGAGTTATCGGTCAAACATAGTAAGCACGGCGGTTTTATTGGCTGTAATAATTACCCTAGCTGTAATTACA
CTCGCCCCTTAGTGCAGCACGAATCTATTGAAACTCAAGTGATTGACGGTTCTGTATGCCCAGAATGCGGTCACGAACTG
GCGGTAAAGTCTGGGCGCTTTGGGATCTTTATTGGTTGTACTCAATATCCTAGCTGCACGCATATTGAAAAACAGGATCA
AGGAGCTAATAAACCAGATATCCCTTGCCCAGAATGCAAAGCGGGTAAGCTTGAGCACAGAACGAGTCGCTTCGGAAAGA
GTTTTTATGCCTGCAGTGCTTACCCTAAGTGCAAATTTATTGTGAATTATCCTCCGGTTGCTGAAGTTTGCCCGAGTTGT
GGTTTTGGGATCTTAGTCGAGCGTAAAGGTGCGGCAGGGATGCGTTTAGAATGCCCGCAAAAAAGCTGTAAATACAAAAG
ACCACTTTAG

Upstream 100 bases:

>100_bases
TGAATTATGAGAGAAAGGAGGCTAAGACCTCCTTTTTTGATGCCATAAATTCCTTGATGGCACCGCGCTTGATATCCTAA
TGCGCTACGACAGGTGGTGA

Downstream 100 bases:

>100_bases
TTTATTGTGTGACCTGCATCTTAATATTTGGCCGATGAAAGTGGCTTGCGTATAATCCTTGGCTGACCGCTGATGGGGCG
GTCAGTATTCGAATTTATCC

Product: DNA topoisomerase type IA Zn finger domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MIMSKIDEQLFSAHEHALEKEYELCPECGSELSVKHSKHGGFIGCNNYPSCNYTRPLVQHESIETQVIDGSVCPECGHEL
AVKSGRFGIFIGCTQYPSCTHIEKQDQGANKPDIPCPECKAGKLEHRTSRFGKSFYACSAYPKCKFIVNYPPVAEVCPSC
GFGILVERKGAAGMRLECPQKSCKYKRPL

Sequences:

>Translated_189_residues
MIMSKIDEQLFSAHEHALEKEYELCPECGSELSVKHSKHGGFIGCNNYPSCNYTRPLVQHESIETQVIDGSVCPECGHEL
AVKSGRFGIFIGCTQYPSCTHIEKQDQGANKPDIPCPECKAGKLEHRTSRFGKSFYACSAYPKCKFIVNYPPVAEVCPSC
GFGILVERKGAAGMRLECPQKSCKYKRPL
>Mature_189_residues
MIMSKIDEQLFSAHEHALEKEYELCPECGSELSVKHSKHGGFIGCNNYPSCNYTRPLVQHESIETQVIDGSVCPECGHEL
AVKSGRFGIFIGCTQYPSCTHIEKQDQGANKPDIPCPECKAGKLEHRTSRFGKSFYACSAYPKCKFIVNYPPVAEVCPSC
GFGILVERKGAAGMRLECPQKSCKYKRPL

Specific function: Unknown

COG id: COG0551

COG function: function code L; Zn-finger domain associated with topoisomerase type I

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0656.1 [H]

Homologues:

Organism=Escherichia coli, GI48994931, Length=168, Percent_Identity=45.2380952380952, Blast_Score=162, Evalue=2e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013498 [H]

Pfam domain/function: PF01396 zf-C4_Topoisom [H]

EC number: NA

Molecular weight: Translated: 20972; Mature: 20972

Theoretical pI: Translated: 7.72; Mature: 7.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

8.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
10.1 %Cys+Met (Translated Protein)
8.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
10.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMSKIDEQLFSAHEHALEKEYELCPECGSELSVKHSKHGGFIGCNNYPSCNYTRPLVQH
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEECCCCCCCCCCCCCHHC
ESIETQVIDGSVCPECGHELAVKSGRFGIFIGCTQYPSCTHIEKQDQGANKPDIPCPECK
CCCCEEEECCCCCCHHCHHHHCCCCCEEEEEECCCCCCCCCCCHHHCCCCCCCCCCCCCC
AGKLEHRTSRFGKSFYACSAYPKCKFIVNYPPVAEVCPSCGFGILVERKGAAGMRLECPQ
CCCHHHHHHHHCCCEEEECCCCCEEEEECCCCHHHHCCCCCCEEEEECCCCCCCEEECCH
KSCKYKRPL
HHCCCCCCC
>Mature Secondary Structure
MIMSKIDEQLFSAHEHALEKEYELCPECGSELSVKHSKHGGFIGCNNYPSCNYTRPLVQH
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEECCCCCCCCCCCCCHHC
ESIETQVIDGSVCPECGHELAVKSGRFGIFIGCTQYPSCTHIEKQDQGANKPDIPCPECK
CCCCEEEECCCCCCHHCHHHHCCCCCEEEEEECCCCCCCCCCCHHHCCCCCCCCCCCCCC
AGKLEHRTSRFGKSFYACSAYPKCKFIVNYPPVAEVCPSCGFGILVERKGAAGMRLECPQ
CCCHHHHHHHHCCCEEEECCCCCEEEEECCCCHHHHCCCCCCEEEEECCCCCCCEEECCH
KSCKYKRPL
HHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]