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The map label for this gene is recF

Identifier: 119947310

GI number: 119947310

Start: 4526929

End: 4528008

Strand: Direct

Name: recF

Synonym: Ping_3716

Alternate gene names: 119947310

Gene position: 4526929-4528008 (Clockwise)

Preceding gene: 119947309

Following gene: 119947311

Centisome position: 99.28

GC content: 35.28

Gene sequence:

>1080_bases
ATGTCACTCAGTAGATTGATTATCCATCAGTTTCGCAATATAAACTCGGCCACACTCGATTTTAATCCTAAAATAAATGT
AGTCGTAGGGCCTAATGGCAGTGGTAAAACAGCACTGCTTGAAGCGATTTACTTTCTTGGACTCGGTCGCTCTTTTCGTA
CTCACTTAACCAGTCGCGTGGTTGAACACGAATCTAAATCCTTTACGCTTTTTAGCGAAATTCAAAATAATAACGGATCA
ATTCCGATTGGTTTACAAAAAAGTAAAAGTGGTGAAACGTTATTAAAAATTAATGGCAGTTACTGCAAAAAATTAGCTAA
TTTAACCCAATACTTGCCATTACAACTTATTACCCCGGAAGGTTACACTTTACTCTCAGGAAGCCCTAAAAACCGGCGTG
CTTTTTTAGATTGGGGGGTTTTCTACCATGATCCTATTTTTTACCCTAACTGGTCGCGTATTAAACGACTTTTAAAGCAA
CGTAATGCCGCTTTAAAGCAATGTAAAACTTACAACGAGCTCCAAATATGGGATAATGAACTTTGTATTTTAAGTGAAGA
AATCAGTCAACAACGAGAAGCTTATTTTGAGTTGCTAATGCCATTAGTAAAACAAACATTAGCCGATTTTTTACCTGATT
TTTCTATTACTAGTCAGTTCTTTTGCGGCTGGGATAAAAACAATAAATCATTACAAGATTATCTGTTTGATAATTTTTAT
CGCGACAAACAAATTGGTTATACCAGTGCTGGGCCTCAAAAAGCAGATCTGCGCTTTAAAATCAATGGAATACCTGTTAG
CGATGTATTATCAAGAGGGCAGTTAAAGTTATTTGTTTACGCCTTACGCTTAGCGCAGGGATTATTTTTAAACTCTTTTG
ATAATAAACAGTGTGTTTTTTTAATTGACGATTTTAGTTCTGAATTAGATCAGAACAAACAACAGATATTAGCAAAGCAT
ATTATAAATTCGAATGCCCAAATATTTATCAGTGTTATTGCAGCAGAAAATATTGATCGATTATTTGGACAGGAACAGAC
TGTGTTTCACGTGGAGCACGGTAAGATTACAGTAGAATAG

Upstream 100 bases:

>100_bases
AGTGATGACTCACTTTATGTGCTTATGCCAATGCGCTTATAGCAGTTACCTCAGGTGACACAAATCCTCAAAAAAATATT
TTCCATTAAAGTGTGCTTAT

Downstream 100 bases:

>100_bases
GTGAAAGTTTGATGGCTGAAAATAGTTATGATTCGTCAAGTATTAAAGTACTAAAAGGGTTAGATGCGGTTCGCAAACGC
CCTGGCATGTATATTGGCGA

Product: DNA replication and repair protein RecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 359; Mature: 358

Protein sequence:

>359_residues
MSLSRLIIHQFRNINSATLDFNPKINVVVGPNGSGKTALLEAIYFLGLGRSFRTHLTSRVVEHESKSFTLFSEIQNNNGS
IPIGLQKSKSGETLLKINGSYCKKLANLTQYLPLQLITPEGYTLLSGSPKNRRAFLDWGVFYHDPIFYPNWSRIKRLLKQ
RNAALKQCKTYNELQIWDNELCILSEEISQQREAYFELLMPLVKQTLADFLPDFSITSQFFCGWDKNNKSLQDYLFDNFY
RDKQIGYTSAGPQKADLRFKINGIPVSDVLSRGQLKLFVYALRLAQGLFLNSFDNKQCVFLIDDFSSELDQNKQQILAKH
IINSNAQIFISVIAAENIDRLFGQEQTVFHVEHGKITVE

Sequences:

>Translated_359_residues
MSLSRLIIHQFRNINSATLDFNPKINVVVGPNGSGKTALLEAIYFLGLGRSFRTHLTSRVVEHESKSFTLFSEIQNNNGS
IPIGLQKSKSGETLLKINGSYCKKLANLTQYLPLQLITPEGYTLLSGSPKNRRAFLDWGVFYHDPIFYPNWSRIKRLLKQ
RNAALKQCKTYNELQIWDNELCILSEEISQQREAYFELLMPLVKQTLADFLPDFSITSQFFCGWDKNNKSLQDYLFDNFY
RDKQIGYTSAGPQKADLRFKINGIPVSDVLSRGQLKLFVYALRLAQGLFLNSFDNKQCVFLIDDFSSELDQNKQQILAKH
IINSNAQIFISVIAAENIDRLFGQEQTVFHVEHGKITVE
>Mature_358_residues
SLSRLIIHQFRNINSATLDFNPKINVVVGPNGSGKTALLEAIYFLGLGRSFRTHLTSRVVEHESKSFTLFSEIQNNNGSI
PIGLQKSKSGETLLKINGSYCKKLANLTQYLPLQLITPEGYTLLSGSPKNRRAFLDWGVFYHDPIFYPNWSRIKRLLKQR
NAALKQCKTYNELQIWDNELCILSEEISQQREAYFELLMPLVKQTLADFLPDFSITSQFFCGWDKNNKSLQDYLFDNFYR
DKQIGYTSAGPQKADLRFKINGIPVSDVLSRGQLKLFVYALRLAQGLFLNSFDNKQCVFLIDDFSSELDQNKQQILAKHI
INSNAQIFISVIAAENIDRLFGQEQTVFHVEHGKITVE

Specific function: The recF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP

COG id: COG1195

COG function: function code L; Recombinational DNA repair ATPase (RecF pathway)

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recF family

Homologues:

Organism=Escherichia coli, GI1790135, Length=357, Percent_Identity=48.7394957983193, Blast_Score=359, Evalue=1e-100,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECF_PSYIN (A1T0X6)

Other databases:

- EMBL:   CP000510
- RefSeq:   YP_944990.1
- ProteinModelPortal:   A1T0X6
- SMR:   A1T0X6
- STRING:   A1T0X6
- GeneID:   4623379
- GenomeReviews:   CP000510_GR
- KEGG:   pin:Ping_3716
- eggNOG:   COG1195
- HOGENOM:   HBG645124
- OMA:   GQQRTLV
- PhylomeDB:   A1T0X6
- BioCyc:   PING357804:PING_3716-MONOMER
- GO:   GO:0005694
- GO:   GO:0005737
- HAMAP:   MF_00365
- InterPro:   IPR001238
- InterPro:   IPR018078
- InterPro:   IPR003395
- TIGRFAMs:   TIGR00611

Pfam domain/function: PF02463 SMC_N

EC number: NA

Molecular weight: Translated: 41098; Mature: 40966

Theoretical pI: Translated: 9.04; Mature: 9.04

Prosite motif: PS00617 RECF_1; PS00618 RECF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLSRLIIHQFRNINSATLDFNPKINVVVGPNGSGKTALLEAIYFLGLGRSFRTHLTSRV
CCHHHHHHHHHCCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
VEHESKSFTLFSEIQNNNGSIPIGLQKSKSGETLLKINGSYCKKLANLTQYLPLQLITPE
HHCCCCCEEEEEECCCCCCCEEEEEECCCCCCEEEEECHHHHHHHHHHHHHCCEEEECCC
GYTLLSGSPKNRRAFLDWGVFYHDPIFYPNWSRIKRLLKQRNAALKQCKTYNELQIWDNE
CEEEECCCCCCCEEEEEECCEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCC
LCILSEEISQQREAYFELLMPLVKQTLADFLPDFSITSQFFCGWDKNNKSLQDYLFDNFY
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHH
RDKQIGYTSAGPQKADLRFKINGIPVSDVLSRGQLKLFVYALRLAQGLFLNSFDNKQCVF
CCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCHHHHHHHHHHHHHHHEECCCCCEEEE
LIDDFSSELDQNKQQILAKHIINSNAQIFISVIAAENIDRLFGQEQTVFHVEHGKITVE
EEECHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHCCCCEEEEEECCEEEEC
>Mature Secondary Structure 
SLSRLIIHQFRNINSATLDFNPKINVVVGPNGSGKTALLEAIYFLGLGRSFRTHLTSRV
CHHHHHHHHHCCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
VEHESKSFTLFSEIQNNNGSIPIGLQKSKSGETLLKINGSYCKKLANLTQYLPLQLITPE
HHCCCCCEEEEEECCCCCCCEEEEEECCCCCCEEEEECHHHHHHHHHHHHHCCEEEECCC
GYTLLSGSPKNRRAFLDWGVFYHDPIFYPNWSRIKRLLKQRNAALKQCKTYNELQIWDNE
CEEEECCCCCCCEEEEEECCEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCC
LCILSEEISQQREAYFELLMPLVKQTLADFLPDFSITSQFFCGWDKNNKSLQDYLFDNFY
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHH
RDKQIGYTSAGPQKADLRFKINGIPVSDVLSRGQLKLFVYALRLAQGLFLNSFDNKQCVF
CCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCHHHHHHHHHHHHHHHEECCCCCEEEE
LIDDFSSELDQNKQQILAKHIINSNAQIFISVIAAENIDRLFGQEQTVFHVEHGKITVE
EEECHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHCCCCEEEEEECCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA