Click here to switch to the map view.

The map label for this gene is cspV [H]

Identifier: 119947299

GI number: 119947299

Start: 4512776

End: 4512985

Strand: Direct

Name: cspV [H]

Synonym: Ping_3704

Alternate gene names: 119947299

Gene position: 4512776-4512985 (Clockwise)

Preceding gene: 119947297

Following gene: 119947300

Centisome position: 98.97

GC content: 40.48

Gene sequence:

>210_bases
ATGTCTAATAAAGTACAAGGAACCGTTAAATGGTTCAACGAAGCGAAAGGTTTTGGTTTTATTGAGCAAGCATCTGGTCC
AGATGTATTCGCTCACTTTAGTGCTATTGCAAGCGAAGGTTTCAAAACCTTAGCTGAAGGCCAAAAAGTAGAATTCACTG
TAAGCCAAGGTCAAAAAGGCCCGCAAGCAGATACTATCGTAGCACTTTAA

Upstream 100 bases:

>100_bases
ATTAATAATACCTCGCACTGTAGTTTTTAAGTTCCAGTCTGTTTTTACGCTATTCAAGCCTTCTAAAGGCAATTTCATAT
TAAAATTACAGGATATTATT

Downstream 100 bases:

>100_bases
TTTGCTCTGATATATTAGCTCCCAAATCGAGCTAAATTGATAAAAAATGGTAAACCTTTTCGGGTTTACCATTTTTTTTG
TTTAAAAACAGGCTTCATCA

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MSNKVQGTVKWFNEAKGFGFIEQASGPDVFAHFSAIASEGFKTLAEGQKVEFTVSQGQKGPQADTIVAL

Sequences:

>Translated_69_residues
MSNKVQGTVKWFNEAKGFGFIEQASGPDVFAHFSAIASEGFKTLAEGQKVEFTVSQGQKGPQADTIVAL
>Mature_68_residues
SNKVQGTVKWFNEAKGFGFIEQASGPDVFAHFSAIASEGFKTLAEGQKVEFTVSQGQKGPQADTIVAL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=67, Percent_Identity=62.6865671641791, Blast_Score=89, Evalue=6e-20,
Organism=Escherichia coli, GI1788126, Length=67, Percent_Identity=64.1791044776119, Blast_Score=86, Evalue=4e-19,
Organism=Escherichia coli, GI2367114, Length=70, Percent_Identity=60, Blast_Score=86, Evalue=6e-19,
Organism=Escherichia coli, GI1787834, Length=70, Percent_Identity=61.4285714285714, Blast_Score=82, Evalue=6e-18,
Organism=Escherichia coli, GI1789979, Length=70, Percent_Identity=57.1428571428571, Blast_Score=81, Evalue=1e-17,
Organism=Escherichia coli, GI1787839, Length=68, Percent_Identity=55.8823529411765, Blast_Score=80, Evalue=2e-17,
Organism=Escherichia coli, GI1787107, Length=65, Percent_Identity=55.3846153846154, Blast_Score=75, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7364; Mature: 7233

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKVQGTVKWFNEAKGFGFIEQASGPDVFAHFSAIASEGFKTLAEGQKVEFTVSQGQKG
CCCCCCHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
PQADTIVAL
CCCCEEEEC
>Mature Secondary Structure 
SNKVQGTVKWFNEAKGFGFIEQASGPDVFAHFSAIASEGFKTLAEGQKVEFTVSQGQKG
CCCCCHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC
PQADTIVAL
CCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]