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The map label for this gene is rarD [H]

Identifier: 119947293

GI number: 119947293

Start: 4506146

End: 4507036

Strand: Reverse

Name: rarD [H]

Synonym: Ping_3697

Alternate gene names: 119947293

Gene position: 4507036-4506146 (Counterclockwise)

Preceding gene: 119947294

Following gene: 119947292

Centisome position: 98.85

GC content: 38.61

Gene sequence:

>891_bases
ATGAGATTTCATTTTTTTGCCATTCTCGCTTTTGTGGTCTGGGGACTCACCCCGGTATTTTTTCATTATTTCCCAGCGAA
TAACATGGCTGAGTTATGGGCGTACCGAATTATCTGGTCATTTACCCTGGTGGTACTTTGGTTAAAATTTACCGGCGTAA
AGGTTGATCTAAAAAAACTTTGGAATGATAAGCGTTCATTTTTAGCCATCTCGATATCCGGGGTGATAATGAATATATCC
TGGTATGGTTTTGTCTATGCGCTTTCAAATAACTATGTGCTGGATGCAAGCATGGCCTATTTTATTGCGCCAATACTAAC
TGCTGGATTCTCATGGTTTTTATTTAAAGAGAAGACCGATAATATCCAGAGGTTATCGCTTTTATTAATGTGTGGCGCGC
TTATCTACCTTGCTATCAGCCAGGGTGTTGCACCCAGTCTTTCTCTTGTTATTGCTGTTTCGTTTGCTGCCTATATGGCA
CTGAAAAAGCTGTCTAAGTTTAGTAATAATGAAAATTTATATATTGAAAACTTAATTCAGCTTCCTGCTGCTTTGATAAC
AGTTGTCGTTATTGCGTCAAGCCATAATCCATCCCAACCAGACCCCGCTTATTATGTTCTTCTTGGGGCGGTTTTCCTGC
AAATTATCCCTGTTTTTCTGCTCTCTGCTGCCATTAGCAATGTAAATCTGCAAAAGATTGTTGTTTATCAGTATGTCGAA
CCCACTCTGCATTTTTTACTTGCGGTCTTTGTCTACCATGAAGGCCTGGATAAGCCATTATTCAACACGCTGATTATTGT
ATGGATAGCCATTGCCATGTGGCTTGGTAATGAAAAAAAGAAATCTTCAAAAACCAATATTCAACATGATCCTAATTTAA
CTGATAATTAA

Upstream 100 bases:

>100_bases
TGTTTGCCGTTCATTTGCAGATAGTTTGGCTGTTATCAACCCAATTCTGAACCATAAAGGAATAATTATCCTCAATGGTT
ACGCATTAGGTCACTTGTAA

Downstream 100 bases:

>100_bases
TGGTGGAACCTATCCATGTGGGAACGAATAAGCAAGACTGTTAAAGATAACGGCATTGTTTATTTTTGCCGCCAGATAGG
CGTGAGTAGCGCCAACCTTC

Product: transporter DMT superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MRFHFFAILAFVVWGLTPVFFHYFPANNMAELWAYRIIWSFTLVVLWLKFTGVKVDLKKLWNDKRSFLAISISGVIMNIS
WYGFVYALSNNYVLDASMAYFIAPILTAGFSWFLFKEKTDNIQRLSLLLMCGALIYLAISQGVAPSLSLVIAVSFAAYMA
LKKLSKFSNNENLYIENLIQLPAALITVVVIASSHNPSQPDPAYYVLLGAVFLQIIPVFLLSAAISNVNLQKIVVYQYVE
PTLHFLLAVFVYHEGLDKPLFNTLIIVWIAIAMWLGNEKKKSSKTNIQHDPNLTDN

Sequences:

>Translated_296_residues
MRFHFFAILAFVVWGLTPVFFHYFPANNMAELWAYRIIWSFTLVVLWLKFTGVKVDLKKLWNDKRSFLAISISGVIMNIS
WYGFVYALSNNYVLDASMAYFIAPILTAGFSWFLFKEKTDNIQRLSLLLMCGALIYLAISQGVAPSLSLVIAVSFAAYMA
LKKLSKFSNNENLYIENLIQLPAALITVVVIASSHNPSQPDPAYYVLLGAVFLQIIPVFLLSAAISNVNLQKIVVYQYVE
PTLHFLLAVFVYHEGLDKPLFNTLIIVWIAIAMWLGNEKKKSSKTNIQHDPNLTDN
>Mature_296_residues
MRFHFFAILAFVVWGLTPVFFHYFPANNMAELWAYRIIWSFTLVVLWLKFTGVKVDLKKLWNDKRSFLAISISGVIMNIS
WYGFVYALSNNYVLDASMAYFIAPILTAGFSWFLFKEKTDNIQRLSLLLMCGALIYLAISQGVAPSLSLVIAVSFAAYMA
LKKLSKFSNNENLYIENLIQLPAALITVVVIASSHNPSQPDPAYYVLLGAVFLQIIPVFLLSAAISNVNLQKIVVYQYVE
PTLHFLLAVFVYHEGLDKPLFNTLIIVWIAIAMWLGNEKKKSSKTNIQHDPNLTDN

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=290, Percent_Identity=30, Blast_Score=125, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 33566; Mature: 33566

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFHFFAILAFVVWGLTPVFFHYFPANNMAELWAYRIIWSFTLVVLWLKFTGVKVDLKKL
CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHH
WNDKRSFLAISISGVIMNISWYGFVYALSNNYVLDASMAYFIAPILTAGFSWFLFKEKTD
HCCCCCEEEEEEEHEEEEEEHHEEEEEECCCEEEEHHHHHHHHHHHHCCCCEEEEECCCC
NIQRLSLLLMCGALIYLAISQGVAPSLSLVIAVSFAAYMALKKLSKFSNNENLYIENLIQ
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
LPAALITVVVIASSHNPSQPDPAYYVLLGAVFLQIIPVFLLSAAISNVNLQKIVVYQYVE
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
PTLHFLLAVFVYHEGLDKPLFNTLIIVWIAIAMWLGNEKKKSSKTNIQHDPNLTDN
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRFHFFAILAFVVWGLTPVFFHYFPANNMAELWAYRIIWSFTLVVLWLKFTGVKVDLKKL
CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHH
WNDKRSFLAISISGVIMNISWYGFVYALSNNYVLDASMAYFIAPILTAGFSWFLFKEKTD
HCCCCCEEEEEEEHEEEEEEHHEEEEEECCCEEEEHHHHHHHHHHHHCCCCEEEEECCCC
NIQRLSLLLMCGALIYLAISQGVAPSLSLVIAVSFAAYMALKKLSKFSNNENLYIENLIQ
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
LPAALITVVVIASSHNPSQPDPAYYVLLGAVFLQIIPVFLLSAAISNVNLQKIVVYQYVE
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
PTLHFLLAVFVYHEGLDKPLFNTLIIVWIAIAMWLGNEKKKSSKTNIQHDPNLTDN
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1379743; 9278503 [H]