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The map label for this gene is phnF [H]

Identifier: 119947292

GI number: 119947292

Start: 4504954

End: 4505676

Strand: Reverse

Name: phnF [H]

Synonym: Ping_3696

Alternate gene names: 119947292

Gene position: 4505676-4504954 (Counterclockwise)

Preceding gene: 119947293

Following gene: 119947291

Centisome position: 98.82

GC content: 39.56

Gene sequence:

>723_bases
ATGATTAATAGATACAGCCCAGAAAAAATTTACAGGCAAATTGCCAATGCGATTGAGGCGGATATTCAAGATGCTTTTGA
GCCCGGTGACTTATATCCATCGGAGAAAATTCTGACGGATAGGTTTGCGGTCAATCGTCATACGGTTCGTCGAGCAGTAG
AAGAATTAGTCAAACAAGGTGTCTTGGAAAAACGTCATGGACTCGGGACTTTTATCGCTGAAAAAAGGTTGGCATATAGC
GTTAAAGGCGATCAGCGTTTTACAGAATCTGTACAGGTTCATGACTTGCAGGTTGAAAGTCTTCTTGTCGATAAAAAGAT
TATTGCTGCTCGTGGTGGTATTGCAGAAAAATTGCAATTAAAGAACGGCGCAGAAGTCTTTCAAATTGACACACTGAGAA
AAATTGAAGGTAAAGAAGCGGCATTAATTAGTCACTTTTTACCAAAAGATATTTGCCCGACGGCATTCGCTAAATATGAA
TCTGGTTCACTAGGAGAATTTTTAAAAGCAGAGTGTGGCATTCAAACAAAAAGAGTGTCGAGCTTAGTCTCTGCCACGAG
ATCAAACGAACAAGACAGTTTCAGACTGGGTATGTCAAGTAACCGACCTATCTTGAAAGTGAAAACAATTAATGAAGATA
CACAAACTGGCAAAAGAGTTGAATACTCGATCACCCGGTTTAGGTCCGACATGATTCAACTTGAAATTTTAATGAACGCT
TAA

Upstream 100 bases:

>100_bases
GGATGTCTACATTGGTAATAAAACCTTAATTAAAATGAAATTTTACTGAAACTTTCTTTATCTAAACTCATCAACAGTTT
TAGACATCTAGACAAGTGAA

Downstream 100 bases:

>100_bases
TTTAACGAATCAGGTATCAACACCTTGAAACATTTATGCAATCTGTCTAATCACTCTTTTGGCTAGATTGTTTAAACCTT
TTATTTTTTAACTTAACTTT

Product: transcriptional regulator, GntR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MINRYSPEKIYRQIANAIEADIQDAFEPGDLYPSEKILTDRFAVNRHTVRRAVEELVKQGVLEKRHGLGTFIAEKRLAYS
VKGDQRFTESVQVHDLQVESLLVDKKIIAARGGIAEKLQLKNGAEVFQIDTLRKIEGKEAALISHFLPKDICPTAFAKYE
SGSLGEFLKAECGIQTKRVSSLVSATRSNEQDSFRLGMSSNRPILKVKTINEDTQTGKRVEYSITRFRSDMIQLEILMNA

Sequences:

>Translated_240_residues
MINRYSPEKIYRQIANAIEADIQDAFEPGDLYPSEKILTDRFAVNRHTVRRAVEELVKQGVLEKRHGLGTFIAEKRLAYS
VKGDQRFTESVQVHDLQVESLLVDKKIIAARGGIAEKLQLKNGAEVFQIDTLRKIEGKEAALISHFLPKDICPTAFAKYE
SGSLGEFLKAECGIQTKRVSSLVSATRSNEQDSFRLGMSSNRPILKVKTINEDTQTGKRVEYSITRFRSDMIQLEILMNA
>Mature_240_residues
MINRYSPEKIYRQIANAIEADIQDAFEPGDLYPSEKILTDRFAVNRHTVRRAVEELVKQGVLEKRHGLGTFIAEKRLAYS
VKGDQRFTESVQVHDLQVESLLVDKKIIAARGGIAEKLQLKNGAEVFQIDTLRKIEGKEAALISHFLPKDICPTAFAKYE
SGSLGEFLKAECGIQTKRVSSLVSATRSNEQDSFRLGMSSNRPILKVKTINEDTQTGKRVEYSITRFRSDMIQLEILMNA

Specific function: Belongs to an operon involved in alkylphosphonate uptake and C-P lyase. Exact function not known. By similarity could be a transcriptional regulator [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790540, Length=230, Percent_Identity=30.4347826086957, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1790118, Length=221, Percent_Identity=24.8868778280543, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1786950, Length=222, Percent_Identity=27.9279279279279, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788418, Length=218, Percent_Identity=26.1467889908257, Blast_Score=80, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012702
- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27090; Mature: 27090

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINRYSPEKIYRQIANAIEADIQDAFEPGDLYPSEKILTDRFAVNRHTVRRAVEELVKQG
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VLEKRHGLGTFIAEKRLAYSVKGDQRFTESVQVHDLQVESLLVDKKIIAARGGIAEKLQL
HHHHHCCCHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
KNGAEVFQIDTLRKIEGKEAALISHFLPKDICPTAFAKYESGSLGEFLKAECGIQTKRVS
CCCCCEEEEHHHHHCCCCHHHHHHHHCCHHCCHHHHHHCCCCCHHHHHHHHCCCCHHHHH
SLVSATRSNEQDSFRLGMSSNRPILKVKTINEDTQTGKRVEYSITRFRSDMIQLEILMNA
HHHHHHCCCCCCCEEECCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHEEEEEEECC
>Mature Secondary Structure
MINRYSPEKIYRQIANAIEADIQDAFEPGDLYPSEKILTDRFAVNRHTVRRAVEELVKQG
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VLEKRHGLGTFIAEKRLAYSVKGDQRFTESVQVHDLQVESLLVDKKIIAARGGIAEKLQL
HHHHHCCCHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
KNGAEVFQIDTLRKIEGKEAALISHFLPKDICPTAFAKYESGSLGEFLKAECGIQTKRVS
CCCCCEEEEHHHHHCCCCHHHHHHHHCCHHCCHHHHHHCCCCCHHHHHHHHCCCCHHHHH
SLVSATRSNEQDSFRLGMSSNRPILKVKTINEDTQTGKRVEYSITRFRSDMIQLEILMNA
HHHHHHCCCCCCCEEECCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2155230; 1840580; 7610040; 9278503 [H]