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The map label for this gene is insF1 [H]

Identifier: 119947269

GI number: 119947269

Start: 4481273

End: 4482076

Strand: Reverse

Name: insF1 [H]

Synonym: Ping_3668

Alternate gene names: 119947269

Gene position: 4482076-4481273 (Counterclockwise)

Preceding gene: 119947270

Following gene: 119947268

Centisome position: 98.3

GC content: 41.79

Gene sequence:

>804_bases
GTGAGTCGTAGTGCATTTTATGATTGGCTTGAACGGCCAGTTAAAATAAATAGTGAAGAAGAGCTGAATATGTACCGTAC
GGCGCGTCAGCTATTTAAACGCAGTCGTGGCAGTTTAGGCTCTCGCCAGTTGTGCAAGAACTTGAGACGAGCGGGTTTTA
ATGTGGGCCGTTACTGTACGCGCAGCATCATGCGTAAGCTGAAACTTGTGGTGACCCAACGCCAGGCATATAAAGTAACA
ACAAAGCGTAAGCATAGTAATAGCGTTGCTGATAACGTATTAAACCAGCAGTTCAATCCCGCACAGGTAAACTTGGTTTG
GGCGGGTTATGTAACGTATTTGAGAACCAATCAAGGCTGGATGTATTTAGCCATTGTCATGGACTTATACTCCCGCAGGG
TTGTCGGTTGGTCTATCTCGAAACGTATGACTGTTGATTTAGTTGAACGCGCATTACAAATGGCGATTAACATCAGGGAA
CCTAAAGCTGGATTAATGTTCCATAGTGATAGAAGCGCTCAATATACTAGCGGGCGATTTAGTCGATTGCTGAACAAGTA
TAAAATAACAGCCTCAATGAGCAGTGTCGGTGCTTGTTTATATAACGCTGTTGTAGAACGATTTTTTGGCAGTTTAAAGA
ATGAATGGTTATTAAATGTTGTGCATTTAACACGTGAAATGATGAAGATGGATGTTGAAGAATATATCCGTTATTACAAC
CATGAACGACTTCATACAACACTCGGTGATTTAACGCCGATTAACTATGAAAATTTACAAAGTCAGGTGTCCGGTTGGAC
TTGA

Upstream 100 bases:

>100_bases
AGGCCAGTGCCTTCTTCGCAAAAGAAATGAAGTAAAGTTTCGATATATTCGAGCATGTCGCTCTAAATATCCAATAAAAC
TACTTTGTAATGTACTACAA

Downstream 100 bases:

>100_bases
CCAGAATATGGTTTGATCACTGCTACATCAATAATTCAATTTATAATGATCTTGCCGTGCCATTGTGATGTATAATTATC
GATTAAATTACCATAGTGAT

Product: integrase catalytic subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MSRSAFYDWLERPVKINSEEELNMYRTARQLFKRSRGSLGSRQLCKNLRRAGFNVGRYCTRSIMRKLKLVVTQRQAYKVT
TKRKHSNSVADNVLNQQFNPAQVNLVWAGYVTYLRTNQGWMYLAIVMDLYSRRVVGWSISKRMTVDLVERALQMAINIRE
PKAGLMFHSDRSAQYTSGRFSRLLNKYKITASMSSVGACLYNAVVERFFGSLKNEWLLNVVHLTREMMKMDVEEYIRYYN
HERLHTTLGDLTPINYENLQSQVSGWT

Sequences:

>Translated_267_residues
MSRSAFYDWLERPVKINSEEELNMYRTARQLFKRSRGSLGSRQLCKNLRRAGFNVGRYCTRSIMRKLKLVVTQRQAYKVT
TKRKHSNSVADNVLNQQFNPAQVNLVWAGYVTYLRTNQGWMYLAIVMDLYSRRVVGWSISKRMTVDLVERALQMAINIRE
PKAGLMFHSDRSAQYTSGRFSRLLNKYKITASMSSVGACLYNAVVERFFGSLKNEWLLNVVHLTREMMKMDVEEYIRYYN
HERLHTTLGDLTPINYENLQSQVSGWT
>Mature_266_residues
SRSAFYDWLERPVKINSEEELNMYRTARQLFKRSRGSLGSRQLCKNLRRAGFNVGRYCTRSIMRKLKLVVTQRQAYKVTT
KRKHSNSVADNVLNQQFNPAQVNLVWAGYVTYLRTNQGWMYLAIVMDLYSRRVVGWSISKRMTVDLVERALQMAINIREP
KAGLMFHSDRSAQYTSGRFSRLLNKYKITASMSSVGACLYNAVVERFFGSLKNEWLLNVVHLTREMMKMDVEEYIRYYNH
ERLHTTLGDLTPINYENLQSQVSGWT

Specific function: Involved in the transposition of the insertion sequence IS3 [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Homo sapiens, GI310129419, Length=187, Percent_Identity=34.2245989304813, Blast_Score=125, Evalue=3e-29,
Organism=Escherichia coli, GI1788405, Length=261, Percent_Identity=36.3984674329502, Blast_Score=174, Evalue=6e-45,
Organism=Escherichia coli, GI1787263, Length=261, Percent_Identity=36.3984674329502, Blast_Score=174, Evalue=6e-45,
Organism=Escherichia coli, GI1786753, Length=261, Percent_Identity=36.3984674329502, Blast_Score=174, Evalue=6e-45,
Organism=Escherichia coli, GI1786570, Length=261, Percent_Identity=36.3984674329502, Blast_Score=174, Evalue=6e-45,
Organism=Escherichia coli, GI1786490, Length=261, Percent_Identity=36.3984674329502, Blast_Score=174, Evalue=6e-45,
Organism=Escherichia coli, GI1789981, Length=261, Percent_Identity=32.9501915708812, Blast_Score=125, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 31301; Mature: 31169

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRSAFYDWLERPVKINSEEELNMYRTARQLFKRSRGSLGSRQLCKNLRRAGFNVGRYCT
CCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHH
RSIMRKLKLVVTQRQAYKVTTKRKHSNSVADNVLNQQFNPAQVNLVWAGYVTYLRTNQGW
HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCEEEEEEEHHHHHEECCCCH
MYLAIVMDLYSRRVVGWSISKRMTVDLVERALQMAINIREPKAGLMFHSDRSAQYTSGRF
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHH
SRLLNKYKITASMSSVGACLYNAVVERFFGSLKNEWLLNVVHLTREMMKMDVEEYIRYYN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
HERLHTTLGDLTPINYENLQSQVSGWT
HHHHHHHHHCCCCCCHHHHHHHHCCCC
>Mature Secondary Structure 
SRSAFYDWLERPVKINSEEELNMYRTARQLFKRSRGSLGSRQLCKNLRRAGFNVGRYCT
CCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHH
RSIMRKLKLVVTQRQAYKVTTKRKHSNSVADNVLNQQFNPAQVNLVWAGYVTYLRTNQGW
HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCEEEEEEEHHHHHEECCCCH
MYLAIVMDLYSRRVVGWSISKRMTVDLVERALQMAINIREPKAGLMFHSDRSAQYTSGRF
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCHHHH
SRLLNKYKITASMSSVGACLYNAVVERFFGSLKNEWLLNVVHLTREMMKMDVEEYIRYYN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
HERLHTTLGDLTPINYENLQSQVSGWT
HHHHHHHHHCCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2987844; 9278503 [H]