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The map label for this gene is ydhC [H]

Identifier: 119947268

GI number: 119947268

Start: 4480454

End: 4481098

Strand: Reverse

Name: ydhC [H]

Synonym: Ping_3667

Alternate gene names: 119947268

Gene position: 4481098-4480454 (Counterclockwise)

Preceding gene: 119947269

Following gene: 119947264

Centisome position: 98.28

GC content: 38.45

Gene sequence:

>645_bases
ATGACGCGGGCTGCGGACAAACTAATATCACAAATTACACAAGACATTACTTCAGGGGTTTTACAGCCTGGCGATCAACT
GAAAGAATCTTTTTTAGCGGAAAAGTTTGGAGTTTCTCGGACACCTATTCGTGAAGCTATAAGAGCCATGGTAAGGCTTG
GTTTATTAGAAGCTATCCCAAGAAAGGGAGTAAAAGTCAGAATTTTAAACACGAAAGAACTTTTGGATTTGTTTGAAGTA
GCTGCAGGGTTGGAGGGCATGGCTAGTAGGTTAGCAGCATATTCACTCACAGACGAGCATGCAAAGGTAATTCTGAGTAA
GTTGGAAAACTGCAAAGTAGCCGCTGAAAATGAGGATAAAGTTCAATATAGTATTGCGAATATAGAATTCCATGCAGCAA
TTCATGAGGCTACCAATAATCGCTGGTTAATTGAACAACTTCAACATATCGGTATACATATTAATACATATCGTTCTTTA
CCTTATAACGTTCGAGAACGACTTTCAAAATCAACAGAAGAACACGAGGCTATTTGCAAAGCAATTCTTGCTGGTGAAGG
TAGTACAGCGAGTCAGTTAATGCGTGATCATATGATGTTGCAAGGACAACGATTACCATCTGTATTAAAATTTTTCACAA
AATAA

Upstream 100 bases:

>100_bases
ATTATCGATTAAATTACCATAGTGATATATAATTATATATAATTATATATCAGTCATCTAAATACAGTTACATATCAGTT
ATCTAAATACAGGACAACTA

Downstream 100 bases:

>100_bases
GTAATTGCTAACCTAACGATGTATCATAGGTTGGATCTTAAGAAATAAAACAATTGAAAACATGCTCTAAATTTGATCTG
ATAGTAATCACCAAACCACC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 213

Protein sequence:

>214_residues
MTRAADKLISQITQDITSGVLQPGDQLKESFLAEKFGVSRTPIREAIRAMVRLGLLEAIPRKGVKVRILNTKELLDLFEV
AAGLEGMASRLAAYSLTDEHAKVILSKLENCKVAAENEDKVQYSIANIEFHAAIHEATNNRWLIEQLQHIGIHINTYRSL
PYNVRERLSKSTEEHEAICKAILAGEGSTASQLMRDHMMLQGQRLPSVLKFFTK

Sequences:

>Translated_214_residues
MTRAADKLISQITQDITSGVLQPGDQLKESFLAEKFGVSRTPIREAIRAMVRLGLLEAIPRKGVKVRILNTKELLDLFEV
AAGLEGMASRLAAYSLTDEHAKVILSKLENCKVAAENEDKVQYSIANIEFHAAIHEATNNRWLIEQLQHIGIHINTYRSL
PYNVRERLSKSTEEHEAICKAILAGEGSTASQLMRDHMMLQGQRLPSVLKFFTK
>Mature_213_residues
TRAADKLISQITQDITSGVLQPGDQLKESFLAEKFGVSRTPIREAIRAMVRLGLLEAIPRKGVKVRILNTKELLDLFEVA
AGLEGMASRLAAYSLTDEHAKVILSKLENCKVAAENEDKVQYSIANIEFHAAIHEATNNRWLIEQLQHIGIHINTYRSLP
YNVRERLSKSTEEHEAICKAILAGEGSTASQLMRDHMMLQGQRLPSVLKFFTK

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082149, Length=198, Percent_Identity=28.7878787878788, Blast_Score=82, Evalue=3e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 23979; Mature: 23848

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRAADKLISQITQDITSGVLQPGDQLKESFLAEKFGVSRTPIREAIRAMVRLGLLEAIP
CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
RKGVKVRILNTKELLDLFEVAAGLEGMASRLAAYSLTDEHAKVILSKLENCKVAAENEDK
CCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCEECCCCCCC
VQYSIANIEFHAAIHEATNNRWLIEQLQHIGIHINTYRSLPYNVRERLSKSTEEHEAICK
EEEEECCCHHHHHHHHHCCCHHHHHHHHHCCCEEECCCCCCHHHHHHHHCCCHHHHHHHH
AILAGEGSTASQLMRDHMMLQGQRLPSVLKFFTK
HHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCC
>Mature Secondary Structure 
TRAADKLISQITQDITSGVLQPGDQLKESFLAEKFGVSRTPIREAIRAMVRLGLLEAIP
CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC
RKGVKVRILNTKELLDLFEVAAGLEGMASRLAAYSLTDEHAKVILSKLENCKVAAENEDK
CCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCEECCCCCCC
VQYSIANIEFHAAIHEATNNRWLIEQLQHIGIHINTYRSLPYNVRERLSKSTEEHEAICK
EEEEECCCHHHHHHHHHCCCHHHHHHHHHCCCEEECCCCCCHHHHHHHHCCCHHHHHHHH
AILAGEGSTASQLMRDHMMLQGQRLPSVLKFFTK
HHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]