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The map label for this gene is fliR [H]

Identifier: 119947197

GI number: 119947197

Start: 4408513

End: 4409292

Strand: Direct

Name: fliR [H]

Synonym: Ping_3595

Alternate gene names: 119947197

Gene position: 4408513-4409292 (Clockwise)

Preceding gene: 119947196

Following gene: 119947198

Centisome position: 96.69

GC content: 43.97

Gene sequence:

>780_bases
ATGAGCATTTCATTTGCTGAAATAACCCAATGGTTAGGGCTGTTTTGGTGGCCCTTTATGCGGATTTCCGGGGTCTTTAT
GTTCGCCCCCATTTTTGGTGATGGCAGTGTGCCAATGAAGGTGCGTTTATCTCTGGCTGTTGTGATGGCGATGCTGGTTG
CTCCACTGATTGCTCCGCAGCCGGCTATTGACCCTTTTTCTCTGCAGGCAATAATATTAAGCGTCACACAATTATTGTGG
GGGCTGTTTTTCGGGTTTCTTTTCCAAATTTTTTTTACCATTTTCACTACTATCGGACAGACTATTTCGGTGCAAATGGG
TCTTGCGATGGCGGTCATGAATGATCCTGCCAATGGGGTTAGTGTGGCAATAATTGGACGATTATTTTTATTCGCATGCA
CTCTGCTGTTTTTAGCCTTTGACGGCCACCTTGCTATATTGGCTTTAATGGTTGAAAGCTTCACCATCTGGCCTATCAAA
CAAGGATTTTCTCTGGGCAGTTTAGCGTTAATTATTAGCATGATGGTTTGGATGTTTGCTTCGGCTTTTGCGATTGCTAT
TCCGGCGATTGCGGCAATGCTGATTGCTAATGCTTCTTTTGGTTTTATGAATAAGGCGGCGCCAAGTTTAAATGTTTTTG
CACTGGGTTTCCCGATGACCATGCTCTTAGGCTTATTTGCACTGCTGATCTCCTTTAGCGGAATAGGCAGTATTTACTTT
GAAATTTTAATGCAGGCGATAAAGTTTGCGCGCAGCTACATGATAGGAGGTATCCAGTGA

Upstream 100 bases:

>100_bases
CCCTATTAACTATTATCTTTGTGGGCAATTGGATGATTACTGAAATAAGCGATTTATTTCGGTACTTGTTTCTTAATATC
CCGCACATCATTGGCTGAAC

Downstream 100 bases:

>100_bases
GTGATAATGCGCAGGATAAAACCGAACAGGCCTCAGCACAGAAACTTAAAAAATCCAAAGGCGAAGGACAAATTGCACGG
GCTAAAGAATTTGCATCTGC

Product: flagellar biosynthetic protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 258

Protein sequence:

>259_residues
MSISFAEITQWLGLFWWPFMRISGVFMFAPIFGDGSVPMKVRLSLAVVMAMLVAPLIAPQPAIDPFSLQAIILSVTQLLW
GLFFGFLFQIFFTIFTTIGQTISVQMGLAMAVMNDPANGVSVAIIGRLFLFACTLLFLAFDGHLAILALMVESFTIWPIK
QGFSLGSLALIISMMVWMFASAFAIAIPAIAAMLIANASFGFMNKAAPSLNVFALGFPMTMLLGLFALLISFSGIGSIYF
EILMQAIKFARSYMIGGIQ

Sequences:

>Translated_259_residues
MSISFAEITQWLGLFWWPFMRISGVFMFAPIFGDGSVPMKVRLSLAVVMAMLVAPLIAPQPAIDPFSLQAIILSVTQLLW
GLFFGFLFQIFFTIFTTIGQTISVQMGLAMAVMNDPANGVSVAIIGRLFLFACTLLFLAFDGHLAILALMVESFTIWPIK
QGFSLGSLALIISMMVWMFASAFAIAIPAIAAMLIANASFGFMNKAAPSLNVFALGFPMTMLLGLFALLISFSGIGSIYF
EILMQAIKFARSYMIGGIQ
>Mature_258_residues
SISFAEITQWLGLFWWPFMRISGVFMFAPIFGDGSVPMKVRLSLAVVMAMLVAPLIAPQPAIDPFSLQAIILSVTQLLWG
LFFGFLFQIFFTIFTTIGQTISVQMGLAMAVMNDPANGVSVAIIGRLFLFACTLLFLAFDGHLAILALMVESFTIWPIKQ
GFSLGSLALIISMMVWMFASAFAIAIPAIAAMLIANASFGFMNKAAPSLNVFALGFPMTMLLGLFALLISFSGIGSIYFE
ILMQAIKFARSYMIGGIQ

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=227, Percent_Identity=33.920704845815, Blast_Score=107, Evalue=6e-25,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 28197; Mature: 28065

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
7.3 %Met     (Translated Protein)
7.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
7.0 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSISFAEITQWLGLFWWPFMRISGVFMFAPIFGDGSVPMKVRLSLAVVMAMLVAPLIAPQ
CCCCHHHHHHHHHHHHHHHHHHCCHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCC
PAIDPFSLQAIILSVTQLLWGLFFGFLFQIFFTIFTTIGQTISVQMGLAMAVMNDPANGV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCH
SVAIIGRLFLFACTLLFLAFDGHLAILALMVESFTIWPIKQGFSLGSLALIISMMVWMFA
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEEEHHCCCCHHHHHHHHHHHHHHHH
SAFAIAIPAIAAMLIANASFGFMNKAAPSLNVFALGFPMTMLLGLFALLISFSGIGSIYF
HHHHHHHHHHHHHHHHCCCCCCHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCHHHHHH
EILMQAIKFARSYMIGGIQ
HHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SISFAEITQWLGLFWWPFMRISGVFMFAPIFGDGSVPMKVRLSLAVVMAMLVAPLIAPQ
CCCHHHHHHHHHHHHHHHHHHCCHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCC
PAIDPFSLQAIILSVTQLLWGLFFGFLFQIFFTIFTTIGQTISVQMGLAMAVMNDPANGV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCH
SVAIIGRLFLFACTLLFLAFDGHLAILALMVESFTIWPIKQGFSLGSLALIISMMVWMFA
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEEEHHCCCCHHHHHHHHHHHHHHHH
SAFAIAIPAIAAMLIANASFGFMNKAAPSLNVFALGFPMTMLLGLFALLISFSGIGSIYF
HHHHHHHHHHHHHHHHCCCCCCHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCHHHHHH
EILMQAIKFARSYMIGGIQ
HHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8412685; 7934865 [H]