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The map label for this gene is flgD [H]

Identifier: 119947178

GI number: 119947178

Start: 4393725

End: 4394417

Strand: Reverse

Name: flgD [H]

Synonym: Ping_3576

Alternate gene names: 119947178

Gene position: 4394417-4393725 (Counterclockwise)

Preceding gene: 119947179

Following gene: 119947177

Centisome position: 96.38

GC content: 43.15

Gene sequence:

>693_bases
GTGGCATTATCTGAAAGCAGTGTATTAGGTGCAGATGTCGCTATTACTCAGATGGCCTCGCAAACTAAGACGATTGACGC
TAATCCCAATGATAGTAGTTCTCTGAAAAATGAATTTATTACCTTAATGGTTGCGCAAATTCAGAATCAGGATCCCTTAA
ATCCCGGCGATGGGACAGAGTATGTAAGCCAATTAGCACAATTTTCTCAGGTTGAAAGTGCTGAAAATATGGTTTCGTTA
ATGCAACGTAATTCGGTGATGATGGATAACCTGCAGGTACTGGCAACAGCTTCACTGGTTGGTCAGGAAGTGATGATCAG
AAGTGATAAATTCAGTGTTGACGGAGAGCCTGCACAAAATCTTTCGGGGCAGGTGGTACTAACAAGTCCTTCATCGCAGG
TCAATTTATTAATTAACGATCAATTTGGTCAGATTAAAAAAGTAGTGCTTGGCCCCCAAGCGGCAGGACAAGTTGATTTT
AAATTAGATGTAGAGGCGTTAAATCTTGCCAAGGGAGCTCACAGTGTCTCGGTCGAGCTGAGCAACGGGCAGGAGTATCA
GCCGCAGATATTACTGAGTGGAAAAATAGAATCAATTAATATTCCTGCTACGGGGGGGGCTTCAATGATCTCTCTTCGTG
GTTTGGGCAGCGTACCATTTTACGATATCAGTCAATTTGGTGGAGCCAATTGA

Upstream 100 bases:

>100_bases
GATATGATGTCTGCGAGCCGCAGCTTTGAAATGAATGTTGAAGTGCTAAATAATGCCAAGTCGATGCAGCAGTCATTAAT
CAGCGTGTTGGATATTTAAC

Downstream 100 bases:

>100_bases
TAAATATTTCTACCAATTAAACATTAACCATATGCTAAGGGGTTATAGATGAGTTTTAATATTGCAATCAGTGGGTTAAA
TGCCACCAATAAACAATTAA

Product: flagellar basal body rod modification protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MALSESSVLGADVAITQMASQTKTIDANPNDSSSLKNEFITLMVAQIQNQDPLNPGDGTEYVSQLAQFSQVESAENMVSL
MQRNSVMMDNLQVLATASLVGQEVMIRSDKFSVDGEPAQNLSGQVVLTSPSSQVNLLINDQFGQIKKVVLGPQAAGQVDF
KLDVEALNLAKGAHSVSVELSNGQEYQPQILLSGKIESINIPATGGASMISLRGLGSVPFYDISQFGGAN

Sequences:

>Translated_230_residues
MALSESSVLGADVAITQMASQTKTIDANPNDSSSLKNEFITLMVAQIQNQDPLNPGDGTEYVSQLAQFSQVESAENMVSL
MQRNSVMMDNLQVLATASLVGQEVMIRSDKFSVDGEPAQNLSGQVVLTSPSSQVNLLINDQFGQIKKVVLGPQAAGQVDF
KLDVEALNLAKGAHSVSVELSNGQEYQPQILLSGKIESINIPATGGASMISLRGLGSVPFYDISQFGGAN
>Mature_229_residues
ALSESSVLGADVAITQMASQTKTIDANPNDSSSLKNEFITLMVAQIQNQDPLNPGDGTEYVSQLAQFSQVESAENMVSLM
QRNSVMMDNLQVLATASLVGQEVMIRSDKFSVDGEPAQNLSGQVVLTSPSSQVNLLINDQFGQIKKVVLGPQAAGQVDFK
LDVEALNLAKGAHSVSVELSNGQEYQPQILLSGKIESINIPATGGASMISLRGLGSVPFYDISQFGGAN

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=164, Percent_Identity=31.0975609756098, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 24336; Mature: 24205

Theoretical pI: Translated: 4.05; Mature: 4.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALSESSVLGADVAITQMASQTKTIDANPNDSSSLKNEFITLMVAQIQNQDPLNPGDGTE
CCCCCCCCCCCHHHHHHHHHHCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
YVSQLAQFSQVESAENMVSLMQRNSVMMDNLQVLATASLVGQEVMIRSDKFSVDGEPAQN
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCC
LSGQVVLTSPSSQVNLLINDQFGQIKKVVLGPQAAGQVDFKLDVEALNLAKGAHSVSVEL
CCCEEEEECCCCEEEEEEECCCCCEEHEEECCCCCCEEEEEEEHHHHHHCCCCEEEEEEE
SNGQEYQPQILLSGKIESINIPATGGASMISLRGLGSVPFYDISQFGGAN
CCCCCCCCEEEEECCEEEEECCCCCCCCEEEECCCCCCCCEEHHHCCCCC
>Mature Secondary Structure 
ALSESSVLGADVAITQMASQTKTIDANPNDSSSLKNEFITLMVAQIQNQDPLNPGDGTE
CCCCCCCCCCHHHHHHHHHHCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
YVSQLAQFSQVESAENMVSLMQRNSVMMDNLQVLATASLVGQEVMIRSDKFSVDGEPAQN
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCC
LSGQVVLTSPSSQVNLLINDQFGQIKKVVLGPQAAGQVDFKLDVEALNLAKGAHSVSVEL
CCCEEEEECCCCEEEEEEECCCCCEEHEEECCCCCCEEEEEEEHHHHHHCCCCEEEEEEE
SNGQEYQPQILLSGKIESINIPATGGASMISLRGLGSVPFYDISQFGGAN
CCCCCCCCEEEEECCEEEEECCCCCCCCEEEECCCCCCCCEEHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]