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The map label for this gene is oxyR [H]

Identifier: 119947099

GI number: 119947099

Start: 4328573

End: 4329478

Strand: Direct

Name: oxyR [H]

Synonym: Ping_3497

Alternate gene names: 119947099

Gene position: 4328573-4329478 (Clockwise)

Preceding gene: 119947095

Following gene: 119947128

Centisome position: 94.93

GC content: 41.17

Gene sequence:

>906_bases
ATGAATTTTAGGGATTTAGAGTACTTAATAGCACTTGAAGAATTAAAACATTTTCGCAAAGCTGCTGAAAAATGCTTTGT
AAGTCAACCGACGCTGAGCGGTCAAATACGTAAACTAGAAGATGAACTGGGTATACAATTAATGGAACGCTCTCCCCGCA
AAGTCCTTTTCACTCCTGCCGGATTGGATATTGTCGCTAAAGCTAAAACCATTTTATTAGAAGTAAAATCATTAAAAGAG
ATAGCTAAAAGTTACAACGAACCGATGCAGGGCACATTACATATCGGGCTTATTCCAACTGTAGCCCCTTATCTGTTACC
TTTGATAGTTGCAGTAATAAAAGCGAATTTTCCCGATTTATCTCTATATCTCTATGAAAAGCAAACTAATCTGTTATTAA
AACAGCTTGAGGAGGGAGAACTCGATTGCCTGATTCTGGCACTGTTACCCGGCATGGAATCCTTTACTCAATATCACCTC
TATCAAGAGCCCTTGGAACTGGCTATCACAGACGTGCACCCATGGGCAAAGCAACCGGAAATAGAGCTTAACGGGCTTCG
TGGTGAACATGTTTTAATGCTGGAAGATGGACATTGCTTAAGGGATCAAACCAAGGGATTTTGTTTTGCAGCGGGCGCCT
TAGAAGATGGCAGTTTTCAAGCGACCAGTCTAGAGACGCTGCGCCATATGATAAGTGCTGAAAACGGCATGACGTTATTA
CCACAATTGGCCATTCCTGTTAATCGGCACGAGGGAGGGATCCAATACATCCCTTTCAAAAATCCAAAGCCCACCCGTGA
AATAAGTTTATTATGCCGCAAAAATAGTGTTCGCAAGATCTGTTTTGAGCAATTAGCAAAACTAATCAGCACAACAGTAC
AGGCTAAATTAAAGGAATATGGGTAA

Upstream 100 bases:

>100_bases
ACTGAAACTTTTCCGGGGTGCACTTTATTGCCCGTTTTCTGGTACAGTTCAATAATAATGTCAGCATATCGTTAAGATTT
TAACGAAGAAGGTTTTTACC

Downstream 100 bases:

>100_bases
CAGGGGACGGCTATCAGCTATAGGCTGACGGCTGTAGGCTGAATTTCAGATACAAAAAAGCCGAACAATTGTTCGGCTTT
TTTAATGTCACTTTAAACTA

Product: transcriptional regulator, substrate-binding, LysR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MNFRDLEYLIALEELKHFRKAAEKCFVSQPTLSGQIRKLEDELGIQLMERSPRKVLFTPAGLDIVAKAKTILLEVKSLKE
IAKSYNEPMQGTLHIGLIPTVAPYLLPLIVAVIKANFPDLSLYLYEKQTNLLLKQLEEGELDCLILALLPGMESFTQYHL
YQEPLELAITDVHPWAKQPEIELNGLRGEHVLMLEDGHCLRDQTKGFCFAAGALEDGSFQATSLETLRHMISAENGMTLL
PQLAIPVNRHEGGIQYIPFKNPKPTREISLLCRKNSVRKICFEQLAKLISTTVQAKLKEYG

Sequences:

>Translated_301_residues
MNFRDLEYLIALEELKHFRKAAEKCFVSQPTLSGQIRKLEDELGIQLMERSPRKVLFTPAGLDIVAKAKTILLEVKSLKE
IAKSYNEPMQGTLHIGLIPTVAPYLLPLIVAVIKANFPDLSLYLYEKQTNLLLKQLEEGELDCLILALLPGMESFTQYHL
YQEPLELAITDVHPWAKQPEIELNGLRGEHVLMLEDGHCLRDQTKGFCFAAGALEDGSFQATSLETLRHMISAENGMTLL
PQLAIPVNRHEGGIQYIPFKNPKPTREISLLCRKNSVRKICFEQLAKLISTTVQAKLKEYG
>Mature_301_residues
MNFRDLEYLIALEELKHFRKAAEKCFVSQPTLSGQIRKLEDELGIQLMERSPRKVLFTPAGLDIVAKAKTILLEVKSLKE
IAKSYNEPMQGTLHIGLIPTVAPYLLPLIVAVIKANFPDLSLYLYEKQTNLLLKQLEEGELDCLILALLPGMESFTQYHL
YQEPLELAITDVHPWAKQPEIELNGLRGEHVLMLEDGHCLRDQTKGFCFAAGALEDGSFQATSLETLRHMISAENGMTLL
PQLAIPVNRHEGGIQYIPFKNPKPTREISLLCRKNSVRKICFEQLAKLISTTVQAKLKEYG

Specific function: Required for the induction of a regulon of hydrogen peroxide inducible genes such as catalase and glutathione- reductase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790399, Length=299, Percent_Identity=55.5183946488294, Blast_Score=335, Evalue=3e-93,
Organism=Escherichia coli, GI157672245, Length=279, Percent_Identity=30.8243727598566, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1787879, Length=279, Percent_Identity=27.9569892473118, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1787530, Length=289, Percent_Identity=25.2595155709343, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI145693105, Length=279, Percent_Identity=25.8064516129032, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1788887, Length=282, Percent_Identity=28.0141843971631, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788748, Length=307, Percent_Identity=23.4527687296417, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1788297, Length=253, Percent_Identity=26.8774703557312, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI2367136, Length=263, Percent_Identity=25.0950570342205, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1790208, Length=159, Percent_Identity=32.0754716981132, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI48994962, Length=295, Percent_Identity=25.4237288135593, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787601, Length=127, Percent_Identity=29.1338582677165, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788296, Length=183, Percent_Identity=27.8688524590164, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33980; Mature: 33980

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFRDLEYLIALEELKHFRKAAEKCFVSQPTLSGQIRKLEDELGIQLMERSPRKVLFTPA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHCCCCCEEEEECC
GLDIVAKAKTILLEVKSLKEIAKSYNEPMQGTLHIGLIPTVAPYLLPLIVAVIKANFPDL
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCE
SLYLYEKQTNLLLKQLEEGELDCLILALLPGMESFTQYHLYQEPLELAITDVHPWAKQPE
EEEEEECHHHHHHHHHCCCCCCEEHHHHHCCHHHHHHHHHHHCCHHEEEECCCCCCCCCC
IELNGLRGEHVLMLEDGHCLRDQTKGFCFAAGALEDGSFQATSLETLRHMISAENGMTLL
EEEECCCCCEEEEEECCCCHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEC
PQLAIPVNRHEGGIQYIPFKNPKPTREISLLCRKNSVRKICFEQLAKLISTTVQAKLKEY
HHHCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC
G
C
>Mature Secondary Structure
MNFRDLEYLIALEELKHFRKAAEKCFVSQPTLSGQIRKLEDELGIQLMERSPRKVLFTPA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHCCCCCEEEEECC
GLDIVAKAKTILLEVKSLKEIAKSYNEPMQGTLHIGLIPTVAPYLLPLIVAVIKANFPDL
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCE
SLYLYEKQTNLLLKQLEEGELDCLILALLPGMESFTQYHLYQEPLELAITDVHPWAKQPE
EEEEEECHHHHHHHHHCCCCCCEEHHHHHCCHHHHHHHHHHHCCHHEEEECCCCCCCCCC
IELNGLRGEHVLMLEDGHCLRDQTKGFCFAAGALEDGSFQATSLETLRHMISAENGMTLL
EEEECCCCCEEEEEECCCCHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEC
PQLAIPVNRHEGGIQYIPFKNPKPTREISLLCRKNSVRKICFEQLAKLISTTVQAKLKEY
HHHCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC
G
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA