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The map label for this gene is yfjD [H]

Identifier: 119946975

GI number: 119946975

Start: 4162792

End: 4164063

Strand: Direct

Name: yfjD [H]

Synonym: Ping_3370

Alternate gene names: 119946975

Gene position: 4162792-4164063 (Clockwise)

Preceding gene: 119946974

Following gene: 119946988

Centisome position: 91.3

GC content: 39.94

Gene sequence:

>1272_bases
TTGGACGTCATACCCACTAGTGGATTACTGATCACCCTTGGAATTTTAATTATTATTTCAGCTTATTTTTCTAGCTCAGA
AACCAGCATGATGTCATTAAATCGCTATCGCTTACGGCACCTTGCAAAGGGTAAAAACAAAGTAGCAATACGCGTTGAAA
ATTTACTTAAAGAACCGGACAAACTTATTGGCCTGATCTTAATAGGTAATAACTTAGTTAATATTTTAGCGTCGGCGATT
GCAACCATCATAGGTCAACGTTTATTTGGTGATGCCGGCATTGCTATAGCGACCGGTATACTGACTTTAATTATTTTGAT
TTTTGCCGAAGTGACCCCAAAAACCTTAGCCGTGCTCTACCCCGAAAAAATCGCCTTTCCAAGTTCATTTATTTTGCGCC
CGTTACAAAAATTGCTCAGCCCACTGGTATGGTTAATCAATGGTATATCCAATACCCTGTTACGAATTTTTGGTGTCAAT
GTTAACCATACGGATGATCAAGCGCTATCAAGCGATGAATTACGCTCAGTGGTGCATGAGGCAGGCTCAATGATTCCAGC
GCATCACCAGCAGATGTTGCTGAGTATTCTGGAGCTTGAAAAAGTCACCGTTGACGAAATAATGATCCCACGTAATGAGA
TTGCCGCAATCAATATTAACGATGATTGGGAGACTATTCTCAAACAATTACAACATCGTACTCATACAATGACACTTTTA
TACCGGGATACCATTGATGATGCGATAGGTTTTGTGCATGCGCGCGATTCTCTCCTGATTCTCCTTAAAGGGGATTTCAC
AAAAACAAGCCTGTTACGTAGTGTGAGAGGATTATATTTTATTCCCGAAGGCACTGCTTTAAATACCCAACTGATTAAAT
TTCAGCATAATAAGGAGCGTATCGGTTTAGTGGTAGATGAATATGGGGATATTCAGGGGTTAGTAACACTTGCCGACATT
TTAGAAGAAATAGTTGGTGACTTTACGACCACACAGGAGCCCCACAGCTCGCAGGAAATTTACAAGCAAAAAGATAATTC
TTATATTATTGAAGGTAGTCTGGGTATTCGCGATATCAATAAAGAAATGGGTTGGAAGCTGCCAACAGATGGACCTCGTA
CTTTGAATGGTCTGATTTTAGAATATCTTGAAGAAATACCTAAAGGACATATCAGTGCGCGTATCTGCGGTTATCCTATG
GAAATCTTAGAAGTGGAAAACAATAAGGTTAAACTGGTCAGGGTGATGCCCCAGCTTTACAAAAAACAATAG

Upstream 100 bases:

>100_bases
TTAACCGATTAAAATAATCGTTTTTGTTTTATGCTCATTTTTTCGCTACTATCGCAGACCTAAAACCCGTTAATTTTTAT
TGAATACAAAGAGAGGACAT

Downstream 100 bases:

>100_bases
ATAGTCTGTCCTGATAATCCATAATAACAGCGCTACTACTTTTTATACGAATATAACAATCTAGATTGCTATATTCGTAT
TCTTCAATTAACGGCAGCGC

Product: hemolysin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 423

Protein sequence:

>423_residues
MDVIPTSGLLITLGILIIISAYFSSSETSMMSLNRYRLRHLAKGKNKVAIRVENLLKEPDKLIGLILIGNNLVNILASAI
ATIIGQRLFGDAGIAIATGILTLIILIFAEVTPKTLAVLYPEKIAFPSSFILRPLQKLLSPLVWLINGISNTLLRIFGVN
VNHTDDQALSSDELRSVVHEAGSMIPAHHQQMLLSILELEKVTVDEIMIPRNEIAAININDDWETILKQLQHRTHTMTLL
YRDTIDDAIGFVHARDSLLILLKGDFTKTSLLRSVRGLYFIPEGTALNTQLIKFQHNKERIGLVVDEYGDIQGLVTLADI
LEEIVGDFTTTQEPHSSQEIYKQKDNSYIIEGSLGIRDINKEMGWKLPTDGPRTLNGLILEYLEEIPKGHISARICGYPM
EILEVENNKVKLVRVMPQLYKKQ

Sequences:

>Translated_423_residues
MDVIPTSGLLITLGILIIISAYFSSSETSMMSLNRYRLRHLAKGKNKVAIRVENLLKEPDKLIGLILIGNNLVNILASAI
ATIIGQRLFGDAGIAIATGILTLIILIFAEVTPKTLAVLYPEKIAFPSSFILRPLQKLLSPLVWLINGISNTLLRIFGVN
VNHTDDQALSSDELRSVVHEAGSMIPAHHQQMLLSILELEKVTVDEIMIPRNEIAAININDDWETILKQLQHRTHTMTLL
YRDTIDDAIGFVHARDSLLILLKGDFTKTSLLRSVRGLYFIPEGTALNTQLIKFQHNKERIGLVVDEYGDIQGLVTLADI
LEEIVGDFTTTQEPHSSQEIYKQKDNSYIIEGSLGIRDINKEMGWKLPTDGPRTLNGLILEYLEEIPKGHISARICGYPM
EILEVENNKVKLVRVMPQLYKKQ
>Mature_423_residues
MDVIPTSGLLITLGILIIISAYFSSSETSMMSLNRYRLRHLAKGKNKVAIRVENLLKEPDKLIGLILIGNNLVNILASAI
ATIIGQRLFGDAGIAIATGILTLIILIFAEVTPKTLAVLYPEKIAFPSSFILRPLQKLLSPLVWLINGISNTLLRIFGVN
VNHTDDQALSSDELRSVVHEAGSMIPAHHQQMLLSILELEKVTVDEIMIPRNEIAAININDDWETILKQLQHRTHTMTLL
YRDTIDDAIGFVHARDSLLILLKGDFTKTSLLRSVRGLYFIPEGTALNTQLIKFQHNKERIGLVVDEYGDIQGLVTLADI
LEEIVGDFTTTQEPHSSQEIYKQKDNSYIIEGSLGIRDINKEMGWKLPTDGPRTLNGLILEYLEEIPKGHISARICGYPM
EILEVENNKVKLVRVMPQLYKKQ

Specific function: Unknown

COG id: COG4536

COG function: function code P; Putative Mg2+ and Co2+ transporter CorB

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=370, Percent_Identity=23.2432432432432, Blast_Score=113, Evalue=4e-25,
Organism=Escherichia coli, GI145693175, Length=398, Percent_Identity=57.7889447236181, Blast_Score=490, Evalue=1e-140,
Organism=Escherichia coli, GI1790664, Length=421, Percent_Identity=26.603325415677, Blast_Score=163, Evalue=2e-41,
Organism=Escherichia coli, GI87082033, Length=252, Percent_Identity=30.5555555555556, Blast_Score=108, Evalue=8e-25,
Organism=Escherichia coli, GI1786879, Length=246, Percent_Identity=23.1707317073171, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1788119, Length=275, Percent_Identity=24, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 47355; Mature: 47355

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVIPTSGLLITLGILIIISAYFSSSETSMMSLNRYRLRHLAKGKNKVAIRVENLLKEPD
CCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCHH
KLIGLILIGNNLVNILASAIATIIGQRLFGDAGIAIATGILTLIILIFAEVTPKTLAVLY
HEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEC
PEKIAFPSSFILRPLQKLLSPLVWLINGISNTLLRIFGVNVNHTDDQALSSDELRSVVHE
CHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCHHHHHHHHHH
AGSMIPAHHQQMLLSILELEKVTVDEIMIPRNEIAAININDDWETILKQLQHRTHTMTLL
HCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEECCCHHHHHHHHHHHHHHEEEE
YRDTIDDAIGFVHARDSLLILLKGDFTKTSLLRSVRGLYFIPEGTALNTQLIKFQHNKER
EHHHHHHHHHHEEECCCEEEEEECCCHHHHHHHHHCCEEECCCCCCCCCEEEEEECCCCC
IGLVVDEYGDIQGLVTLADILEEIVGDFTTTQEPHSSQEIYKQKDNSYIIEGSLGIRDIN
EEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCEEEECCCCHHHHH
KEMGWKLPTDGPRTLNGLILEYLEEIPKGHISARICGYPMEILEVENNKVKLVRVMPQLY
HHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCEEEEECCCCEEHHHHHHHHH
KKQ
CCC
>Mature Secondary Structure
MDVIPTSGLLITLGILIIISAYFSSSETSMMSLNRYRLRHLAKGKNKVAIRVENLLKEPD
CCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCHH
KLIGLILIGNNLVNILASAIATIIGQRLFGDAGIAIATGILTLIILIFAEVTPKTLAVLY
HEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEC
PEKIAFPSSFILRPLQKLLSPLVWLINGISNTLLRIFGVNVNHTDDQALSSDELRSVVHE
CHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCHHHHHHHHHH
AGSMIPAHHQQMLLSILELEKVTVDEIMIPRNEIAAININDDWETILKQLQHRTHTMTLL
HCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCEEEEEECCCHHHHHHHHHHHHHHEEEE
YRDTIDDAIGFVHARDSLLILLKGDFTKTSLLRSVRGLYFIPEGTALNTQLIKFQHNKER
EHHHHHHHHHHEEECCCEEEEEECCCHHHHHHHHHCCEEECCCCCCCCCEEEEEECCCCC
IGLVVDEYGDIQGLVTLADILEEIVGDFTTTQEPHSSQEIYKQKDNSYIIEGSLGIRDIN
EEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCEEEECCCCHHHHH
KEMGWKLPTDGPRTLNGLILEYLEEIPKGHISARICGYPMEILEVENNKVKLVRVMPQLY
HHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCEEEEECCCCEEHHHHHHHHH
KKQ
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 3045760 [H]