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The map label for this gene is ypjD [H]

Identifier: 119946974

GI number: 119946974

Start: 4161565

End: 4162356

Strand: Direct

Name: ypjD [H]

Synonym: Ping_3369

Alternate gene names: 119946974

Gene position: 4161565-4162356 (Clockwise)

Preceding gene: 119946967

Following gene: 119946975

Centisome position: 91.27

GC content: 35.73

Gene sequence:

>792_bases
ATGGATTACTGGGCATTAATTGTCGCGACTTTTTATTTGATCGGTGGTGGCTTAGCGGTCAATATATTATTTAATCGAAC
AAAACCTTTTTACAAGTGTTTTATTGGATCAACAATCATCGCGCTCTCTACCCACGTAGTCTGGTTATATCAAAATATTT
TCTTACTTAACGGGCAAAACCTGCCGATGTTAAATGTTGTGTCTTTAATTGGATTTTTAATCGCATTACTGACAGCAATA
ATGGGTAAGCGCCTTAATACGGGCGTTTTGTTACCGGTGATATATGGATTTAATATTATTAACTTTATTGCTGTTGCGTA
TTTTCCAAGCCATTTTATTACCCATTTAGAAATACATCCGGCCATCGGATCGCATATTATTTTGGCCCTGTTAGCCTATG
CAATCCTTAGTATTGCCAGCCTTTTTGCATTACAACTTGCCTACATTAATTATCGATTAAAAAATCATAAACGGCCCTTA
GCAATGACTAATATGCCACCTTTGATGACTCTGGAAAAAAGCTTATTTCAGTTTATTTTTATTGGCTTTATTTTATTAAG
TTGTACCCTGATAACCGGATTTATTTTCTTGGAAGATATGTTTGCACAGGGAAAGGCACATAAAGCTATCCTGTCGATAA
TCGCATGGATAATTTATGCGATTTTATTATGGGGACATTATACAAAAGGTTGGCGGGGACAATTGATTGTTTATATCACT
ATTGTTGCCTCCTCTTTCTTAACTCTCGCCTATTTTGGCAGTCGATTTGTCCGTGAAATTATACTTAGCTAA

Upstream 100 bases:

>100_bases
AATGCCAAGATCAAACGCTAGGCCGAATTGTTACCCTAGAAGATAACGAATTGATGGGTTATTATAATAACTGCAATATA
AATAACAAGAGTGAGTTGAT

Downstream 100 bases:

>100_bases
ACAACATTTAACTGTTCTCAGTGAGAAATAACCTGATCGCGCACCGCTTTTATTGAAAATAATATTTGCAGTGCCTGTCA
GGCTGGCAATAACTGATACC

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MDYWALIVATFYLIGGGLAVNILFNRTKPFYKCFIGSTIIALSTHVVWLYQNIFLLNGQNLPMLNVVSLIGFLIALLTAI
MGKRLNTGVLLPVIYGFNIINFIAVAYFPSHFITHLEIHPAIGSHIILALLAYAILSIASLFALQLAYINYRLKNHKRPL
AMTNMPPLMTLEKSLFQFIFIGFILLSCTLITGFIFLEDMFAQGKAHKAILSIIAWIIYAILLWGHYTKGWRGQLIVYIT
IVASSFLTLAYFGSRFVREIILS

Sequences:

>Translated_263_residues
MDYWALIVATFYLIGGGLAVNILFNRTKPFYKCFIGSTIIALSTHVVWLYQNIFLLNGQNLPMLNVVSLIGFLIALLTAI
MGKRLNTGVLLPVIYGFNIINFIAVAYFPSHFITHLEIHPAIGSHIILALLAYAILSIASLFALQLAYINYRLKNHKRPL
AMTNMPPLMTLEKSLFQFIFIGFILLSCTLITGFIFLEDMFAQGKAHKAILSIIAWIIYAILLWGHYTKGWRGQLIVYIT
IVASSFLTLAYFGSRFVREIILS
>Mature_263_residues
MDYWALIVATFYLIGGGLAVNILFNRTKPFYKCFIGSTIIALSTHVVWLYQNIFLLNGQNLPMLNVVSLIGFLIALLTAI
MGKRLNTGVLLPVIYGFNIINFIAVAYFPSHFITHLEIHPAIGSHIILALLAYAILSIASLFALQLAYINYRLKNHKRPL
AMTNMPPLMTLEKSLFQFIFIGFILLSCTLITGFIFLEDMFAQGKAHKAILSIIAWIIYAILLWGHYTKGWRGQLIVYIT
IVASSFLTLAYFGSRFVREIILS

Specific function: Unknown

COG id: COG4137

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693174, Length=263, Percent_Identity=41.06463878327, Blast_Score=185, Evalue=2e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 29660; Mature: 29660

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYWALIVATFYLIGGGLAVNILFNRTKPFYKCFIGSTIIALSTHVVWLYQNIFLLNGQN
CCHHHHHHHHHHHHCCCHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCC
LPMLNVVSLIGFLIALLTAIMGKRLNTGVLLPVIYGFNIINFIAVAYFPSHFITHLEIHP
CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC
AIGSHIILALLAYAILSIASLFALQLAYINYRLKNHKRPLAMTNMPPLMTLEKSLFQFIF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHH
IGFILLSCTLITGFIFLEDMFAQGKAHKAILSIIAWIIYAILLWGHYTKGWRGQLIVYIT
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHH
IVASSFLTLAYFGSRFVREIILS
HHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDYWALIVATFYLIGGGLAVNILFNRTKPFYKCFIGSTIIALSTHVVWLYQNIFLLNGQN
CCHHHHHHHHHHHHCCCHHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCC
LPMLNVVSLIGFLIALLTAIMGKRLNTGVLLPVIYGFNIINFIAVAYFPSHFITHLEIHP
CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC
AIGSHIILALLAYAILSIASLFALQLAYINYRLKNHKRPLAMTNMPPLMTLEKSLFQFIF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHH
IGFILLSCTLITGFIFLEDMFAQGKAHKAILSIIAWIIYAILLWGHYTKGWRGQLIVYIT
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHH
IVASSFLTLAYFGSRFVREIILS
HHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]