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The map label for this gene is trmL [H]

Identifier: 119946907

GI number: 119946907

Start: 4071874

End: 4072338

Strand: Direct

Name: trmL [H]

Synonym: Ping_3301

Alternate gene names: 119946907

Gene position: 4071874-4072338 (Clockwise)

Preceding gene: 119946904

Following gene: 119946911

Centisome position: 89.3

GC content: 41.08

Gene sequence:

>465_bases
ATGATTGAAATAGCACTATTTGAACCTGAAATCCCGCAAAATACTGGCGCCATTATCCGTTTATGTGCCAATACAGGCTG
TGTTTTGCACTTAATCGAACCTTTAGGTTTTGATTTAGATGAGAAAAAAGTCCGCAGAGCAGGACTCGACTACCATGAAC
TGACCCATGTTTATCGCCATAAAAATTACAACGATTTTTTACAGGCGGTATCAGGTAAAAGAATTTTTGCTTGTACAACA
AAAACAACTACCTTTCATAGTCAGGCAAATTTTCAAGCGGACGATGTATTACTTTTTGGCCCTGAAACACGAGGATTACC
CGGTGAAATCCTCGATGCTTTACCCCTCGAGCAAAAACTGCGTATTCCAATGAGAGCGGAAAGTCGCTCAATGAACTTAT
CTAATGCAGTCTCAGTATTCGTCTACGAAGCTTGGCGCCAACTCGATTTTGAAGGCGCAGTTTAA

Upstream 100 bases:

>100_bases
ATGCACTTACAATTCCCTCGATTTGACTAAACAGTCAACTTGCAACGATAATAAAAACGGTTTCTATAACGAGACTAAAC
AAAGAAGATGGCTACCGACT

Downstream 100 bases:

>100_bases
ACAAACGGCTAACGGCTGTCAGCTGACAGCTTCTTATTTCGTTCTTATTCCGCTCGTAACACTTCCACCAGCATCTGCAC
TGTCCTATTACCTCTAAATT

Product: RNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MIEIALFEPEIPQNTGAIIRLCANTGCVLHLIEPLGFDLDEKKVRRAGLDYHELTHVYRHKNYNDFLQAVSGKRIFACTT
KTTTFHSQANFQADDVLLFGPETRGLPGEILDALPLEQKLRIPMRAESRSMNLSNAVSVFVYEAWRQLDFEGAV

Sequences:

>Translated_154_residues
MIEIALFEPEIPQNTGAIIRLCANTGCVLHLIEPLGFDLDEKKVRRAGLDYHELTHVYRHKNYNDFLQAVSGKRIFACTT
KTTTFHSQANFQADDVLLFGPETRGLPGEILDALPLEQKLRIPMRAESRSMNLSNAVSVFVYEAWRQLDFEGAV
>Mature_154_residues
MIEIALFEPEIPQNTGAIIRLCANTGCVLHLIEPLGFDLDEKKVRRAGLDYHELTHVYRHKNYNDFLQAVSGKRIFACTT
KTTTFHSQANFQADDVLLFGPETRGLPGEILDALPLEQKLRIPMRAESRSMNLSNAVSVFVYEAWRQLDFEGAV

Specific function: Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide [H]

COG id: COG0219

COG function: function code J; Predicted rRNA methylase (SpoU class)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family. TrmL subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790034, Length=154, Percent_Identity=66.8831168831169, Blast_Score=218, Evalue=2e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004440
- InterPro:   IPR016914
- InterPro:   IPR001537 [H]

Pfam domain/function: PF00588 SpoU_methylase [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 17436; Mature: 17436

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEIALFEPEIPQNTGAIIRLCANTGCVLHLIEPLGFDLDEKKVRRAGLDYHELTHVYRH
CEEEEEECCCCCCCCCCEEEEECCCCEEEEEEHHCCCCCCHHHHHHHCCCHHHHHHHHHC
KNYNDFLQAVSGKRIFACTTKTTTFHSQANFQADDVLLFGPETRGLPGEILDALPLEQKL
CCHHHHHHHHCCCEEEEEECCCEEEECCCCCCCCCEEEECCCCCCCCHHHHHHCCCHHHC
RIPMRAESRSMNLSNAVSVFVYEAWRQLDFEGAV
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MIEIALFEPEIPQNTGAIIRLCANTGCVLHLIEPLGFDLDEKKVRRAGLDYHELTHVYRH
CEEEEEECCCCCCCCCCEEEEECCCCEEEEEEHHCCCCCCHHHHHHHCCCHHHHHHHHHC
KNYNDFLQAVSGKRIFACTTKTTTFHSQANFQADDVLLFGPETRGLPGEILDALPLEQKL
CCHHHHHHHHCCCEEEEEECCCEEEECCCCCCCCCEEEECCCCCCCCHHHHHHCCCHHHC
RIPMRAESRSMNLSNAVSVFVYEAWRQLDFEGAV
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA