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The map label for this gene is yggB [C]

Identifier: 119946670

GI number: 119946670

Start: 3749116

End: 3749973

Strand: Direct

Name: yggB [C]

Synonym: Ping_3051

Alternate gene names: 119946670

Gene position: 3749116-3749973 (Clockwise)

Preceding gene: 119946669

Following gene: 119946674

Centisome position: 82.22

GC content: 39.63

Gene sequence:

>858_bases
ATGAATGAGATCGGGCATTACCTCTCTGATGTTTTTAATATCGAATTTATCGCCAAACTGCTGCGCGCAGCTTTATTATT
AATATTAGGCTTTATCTTTGCCAAATTGCTCAGTTATTACAGCACACGCTTTAGCGAAAAAGTATTTACCCTGCAGACCG
CCGGTCTTATTAAGCGAATCATCTATCACCTGATTTTTATACTCTTTATCTTTTCAGCAATGTTAGAGATGGGCTTTAAT
CTTAACGTTCTGCTGGGTGCTGCCAGCGTATTAACCGTGGCGGTGGGCTTTGCTTCACAAACCTCAGCATCCAATTTTAT
TAGCGGTATTTTCCTGATGGCTGAACGCTCATTTAGCGTCGGGGATGTGATTCGTGTGGGCACCACAGTAGGAGAAGTCT
TATCCATTGATCTGCTATCGGTTAAGTTGCGTACCTTTGATAACTTATTTGTCCGCTTGCCTAATGAAACATTAATTAAA
TCCGAGGTGACCACCCTCACTAAATTCCCGATTAGGCGGCTGGATCTAAAGATTGGCATCGCCTATAAAGAAAATATTGA
TAAAGTGAAAACTATTTTACAGCAGGTCGCATCGGATAATCCGTTATCTTTGGAGGAGCCAAAACCTTTATATATTTTTC
AAGGATTTGAAGATTCATGCTTAAGTCTGCAGTTTTCAGTCTGGGCAAAGCGGGAAAATTTTTTGGAATTAAAAAATTCG
ATTTACGAGCAGATAAAAATCGCTTTTGATAAACAGGAAATCGAAATACCTTTCCCGCATATTAGTCTCTACGCAGGCAG
TGTTACCGAGCCTTTTCCCATTAAAATAACCAGAGAAAAAAAATCATCAAAGCAGTGA

Upstream 100 bases:

>100_bases
CTGCTGCGCGCGGCTTTATTATTAATATTAGGTTTTATCTTTGCCAAGCTGATCAGTTATTACAGTACGCGCTTTAGCGA
AATTTAACTAAGGATACAAA

Downstream 100 bases:

>100_bases
GTTCAAAACCTTTGGACCCACTCCTTATATCGATATGGTTGCGCCGATTTGGCTGTACAGATTAAATTAACCAGGTGGCA
ACGTCGCGCAGCGCCGCAAC

Product: MscS mechanosensitive ion channel

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MNEIGHYLSDVFNIEFIAKLLRAALLLILGFIFAKLLSYYSTRFSEKVFTLQTAGLIKRIIYHLIFILFIFSAMLEMGFN
LNVLLGAASVLTVAVGFASQTSASNFISGIFLMAERSFSVGDVIRVGTTVGEVLSIDLLSVKLRTFDNLFVRLPNETLIK
SEVTTLTKFPIRRLDLKIGIAYKENIDKVKTILQQVASDNPLSLEEPKPLYIFQGFEDSCLSLQFSVWAKRENFLELKNS
IYEQIKIAFDKQEIEIPFPHISLYAGSVTEPFPIKITREKKSSKQ

Sequences:

>Translated_285_residues
MNEIGHYLSDVFNIEFIAKLLRAALLLILGFIFAKLLSYYSTRFSEKVFTLQTAGLIKRIIYHLIFILFIFSAMLEMGFN
LNVLLGAASVLTVAVGFASQTSASNFISGIFLMAERSFSVGDVIRVGTTVGEVLSIDLLSVKLRTFDNLFVRLPNETLIK
SEVTTLTKFPIRRLDLKIGIAYKENIDKVKTILQQVASDNPLSLEEPKPLYIFQGFEDSCLSLQFSVWAKRENFLELKNS
IYEQIKIAFDKQEIEIPFPHISLYAGSVTEPFPIKITREKKSSKQ
>Mature_285_residues
MNEIGHYLSDVFNIEFIAKLLRAALLLILGFIFAKLLSYYSTRFSEKVFTLQTAGLIKRIIYHLIFILFIFSAMLEMGFN
LNVLLGAASVLTVAVGFASQTSASNFISGIFLMAERSFSVGDVIRVGTTVGEVLSIDLLSVKLRTFDNLFVRLPNETLIK
SEVTTLTKFPIRRLDLKIGIAYKENIDKVKTILQQVASDNPLSLEEPKPLYIFQGFEDSCLSLQFSVWAKRENFLELKNS
IYEQIKIAFDKQEIEIPFPHISLYAGSVTEPFPIKITREKKSSKQ

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=267, Percent_Identity=24.7191011235955, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1786670, Length=215, Percent_Identity=26.9767441860465, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787591, Length=269, Percent_Identity=28.6245353159851, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI2367355, Length=213, Percent_Identity=22.0657276995305, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 32257; Mature: 32257

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEIGHYLSDVFNIEFIAKLLRAALLLILGFIFAKLLSYYSTRFSEKVFTLQTAGLIKRI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IYHLIFILFIFSAMLEMGFNLNVLLGAASVLTVAVGFASQTSASNFISGIFLMAERSFSV
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCH
GDVIRVGTTVGEVLSIDLLSVKLRTFDNLFVRLPNETLIKSEVTTLTKFPIRRLDLKIGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHCCHHHHEEEEEE
AYKENIDKVKTILQQVASDNPLSLEEPKPLYIFQGFEDSCLSLQFSVWAKRENFLELKNS
HHHHCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCHHEEEHHHHHHHHHHHHHHHH
IYEQIKIAFDKQEIEIPFPHISLYAGSVTEPFPIKITREKKSSKQ
HHHHHHHHCCCCEEEECCCCEEEEECCCCCCCCEEEECCCCCCCC
>Mature Secondary Structure
MNEIGHYLSDVFNIEFIAKLLRAALLLILGFIFAKLLSYYSTRFSEKVFTLQTAGLIKRI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IYHLIFILFIFSAMLEMGFNLNVLLGAASVLTVAVGFASQTSASNFISGIFLMAERSFSV
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCH
GDVIRVGTTVGEVLSIDLLSVKLRTFDNLFVRLPNETLIKSEVTTLTKFPIRRLDLKIGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHCCHHHHEEEEEE
AYKENIDKVKTILQQVASDNPLSLEEPKPLYIFQGFEDSCLSLQFSVWAKRENFLELKNS
HHHHCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCHHEEEHHHHHHHHHHHHHHHH
IYEQIKIAFDKQEIEIPFPHISLYAGSVTEPFPIKITREKKSSKQ
HHHHHHHHCCCCEEEECCCCEEEEECCCCCCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]