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The map label for this gene is yggS [H]

Identifier: 119946661

GI number: 119946661

Start: 3739894

End: 3740592

Strand: Direct

Name: yggS [H]

Synonym: Ping_3040

Alternate gene names: 119946661

Gene position: 3739894-3740592 (Clockwise)

Preceding gene: 119946657

Following gene: 119946662

Centisome position: 82.02

GC content: 40.2

Gene sequence:

>699_bases
ATGACTAATATATCTAAAAAAATTAAAAATGTAGAACAAACAATCATTCAGGCGGCTCAACGAGCGGGCCGGAATGCTGA
TCAAATTCAATTACTCGCGGTCAGTAAAACCAAACCGGTAGCACTGATAAAAGAAGCTTACCTGGCAGGCTTACGTCATT
TTGGTGAAAACTATGTACAAGAAAGCATCGAAAAAATTCAGCAGATCAAACTTGATACTGATTTTGAGCAAGCCGTTTTC
TGGTATTTTATTGGCCCGCTGCAATCTAATAAAACACGCCCTGTGGCTGAAAACTTCGATTGGGTACAGAGTGTCGAGCG
ACTAAAAATAGCACAGCGCTTAAATGATCAACGCCCTGACCATTTACCCAAACTAAATGTTTGTTTACAGGTTAATATTA
GCGGAGAACAAAGTAAATCGGGTACTACTTTATTACAAGTTATCGAACTGGCTTCACAAGTTAATAATCTACCACGTTTA
ACACTGCGTGGTATTATGGCGATTCCGGAAAAAACCGACGATCAGCTGCGACTTGAAAAACAGTTCAATGAACTCCATAA
CATTTACCTGCACCTACAACAGTTATACCCGCAAGTTGATACTCTGTCGATGGGAATGAGTGGGGATTTAGAAAAAGCAA
TTGCCTGCGGCAGTACTATGGTCAGAATCGGAACTGATATTTTTGGTTCAAGAGGTTAG

Upstream 100 bases:

>100_bases
TCATTGGAGGAACTCCTGAAGAAAGGTGTAGATCTGACGCATTATGCTTTACACTGAAAGCCAATAATTCTGTTATATCC
ATGTGATTAAAACCTTATTT

Downstream 100 bases:

>100_bases
AGAACAGCAGGAAATTTGTCTGAAAAACGCGTTTGGTTGAACCCTTGATAGGTCAATTAACGGAAGCATTTAATATGAAC
CGGGTTTGGGCAGGAAAATG

Product: alanine racemase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MTNISKKIKNVEQTIIQAAQRAGRNADQIQLLAVSKTKPVALIKEAYLAGLRHFGENYVQESIEKIQQIKLDTDFEQAVF
WYFIGPLQSNKTRPVAENFDWVQSVERLKIAQRLNDQRPDHLPKLNVCLQVNISGEQSKSGTTLLQVIELASQVNNLPRL
TLRGIMAIPEKTDDQLRLEKQFNELHNIYLHLQQLYPQVDTLSMGMSGDLEKAIACGSTMVRIGTDIFGSRG

Sequences:

>Translated_232_residues
MTNISKKIKNVEQTIIQAAQRAGRNADQIQLLAVSKTKPVALIKEAYLAGLRHFGENYVQESIEKIQQIKLDTDFEQAVF
WYFIGPLQSNKTRPVAENFDWVQSVERLKIAQRLNDQRPDHLPKLNVCLQVNISGEQSKSGTTLLQVIELASQVNNLPRL
TLRGIMAIPEKTDDQLRLEKQFNELHNIYLHLQQLYPQVDTLSMGMSGDLEKAIACGSTMVRIGTDIFGSRG
>Mature_231_residues
TNISKKIKNVEQTIIQAAQRAGRNADQIQLLAVSKTKPVALIKEAYLAGLRHFGENYVQESIEKIQQIKLDTDFEQAVFW
YFIGPLQSNKTRPVAENFDWVQSVERLKIAQRLNDQRPDHLPKLNVCLQVNISGEQSKSGTTLLQVIELASQVNNLPRLT
LRGIMAIPEKTDDQLRLEKQFNELHNIYLHLQQLYPQVDTLSMGMSGDLEKAIACGSTMVRIGTDIFGSRG

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=239, Percent_Identity=37.2384937238494, Blast_Score=119, Evalue=3e-27,
Organism=Escherichia coli, GI1789321, Length=235, Percent_Identity=52.3404255319149, Blast_Score=242, Evalue=2e-65,
Organism=Caenorhabditis elegans, GI17533025, Length=241, Percent_Identity=34.0248962655602, Blast_Score=99, Evalue=1e-21,
Organism=Saccharomyces cerevisiae, GI6319435, Length=218, Percent_Identity=37.1559633027523, Blast_Score=114, Evalue=9e-27,
Organism=Drosophila melanogaster, GI45550861, Length=236, Percent_Identity=35.1694915254237, Blast_Score=116, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 26231; Mature: 26099

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNISKKIKNVEQTIIQAAQRAGRNADQIQLLAVSKTKPVALIKEAYLAGLRHFGENYVQ
CCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
ESIEKIQQIKLDTDFEQAVFWYFIGPLQSNKTRPVAENFDWVQSVERLKIAQRLNDQRPD
HHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
HLPKLNVCLQVNISGEQSKSGTTLLQVIELASQVNNLPRLTLRGIMAIPEKTDDQLRLEK
CCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHH
QFNELHNIYLHLQQLYPQVDTLSMGMSGDLEKAIACGSTMVRIGTDIFGSRG
HHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
TNISKKIKNVEQTIIQAAQRAGRNADQIQLLAVSKTKPVALIKEAYLAGLRHFGENYVQ
CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
ESIEKIQQIKLDTDFEQAVFWYFIGPLQSNKTRPVAENFDWVQSVERLKIAQRLNDQRPD
HHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
HLPKLNVCLQVNISGEQSKSGTTLLQVIELASQVNNLPRLTLRGIMAIPEKTDDQLRLEK
CCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHH
QFNELHNIYLHLQQLYPQVDTLSMGMSGDLEKAIACGSTMVRIGTDIFGSRG
HHHHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]