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The map label for this gene is ihfB

Identifier: 119946633

GI number: 119946633

Start: 3711968

End: 3712255

Strand: Reverse

Name: ihfB

Synonym: Ping_3012

Alternate gene names: 119946633

Gene position: 3712255-3711968 (Counterclockwise)

Preceding gene: 119946634

Following gene: 119946632

Centisome position: 81.42

GC content: 39.93

Gene sequence:

>288_bases
ATGACTAAGTCTGATTTGATTGAAAGACTAACCAGTAAGCACTTTCAATTGTCGGTAAAAGAGGTGGAAGATAGTGTAAA
AGAAACATTAACGCTAATGGCTAATTCACTTGCACAAGGCGAACGAATTGAAGTTAGAGGTTTTGGTAGTTTCTCTTTAC
ATTATCGCGCCCCAAGAGTTGGACGAAATCCCAAAACAGGGGATAGAGTTGAACTCGATGGTAAGTATGTTCCTCACTTT
AAACCTGGCAAGGCATTGAGAGAGCGAGTAAATGCAGCAAATGCTTAA

Upstream 100 bases:

>100_bases
AATTTGGGAAAAGCATCTCCGATTTTCCAGAGCGCTTAGGTAATAATTAGCATTAACTGGAGTCGGTTTACTGTATTCAA
ATTTGAACGCGAGGTAAGTT

Downstream 100 bases:

>100_bases
CTAAAAAATGGTGCTTTTATAGCACCATTTTTTTTACCTTAAATTCACCTTACCTCTCCTTTAAAAAATTAAATTCTTTG
TTTTTATCCATTTTCCTTGC

Product: integration host factor, beta subunit

Products: NA

Alternate protein names: IHF-beta

Number of amino acids: Translated: 95; Mature: 94

Protein sequence:

>95_residues
MTKSDLIERLTSKHFQLSVKEVEDSVKETLTLMANSLAQGERIEVRGFGSFSLHYRAPRVGRNPKTGDRVELDGKYVPHF
KPGKALRERVNAANA

Sequences:

>Translated_95_residues
MTKSDLIERLTSKHFQLSVKEVEDSVKETLTLMANSLAQGERIEVRGFGSFSLHYRAPRVGRNPKTGDRVELDGKYVPHF
KPGKALRERVNAANA
>Mature_94_residues
TKSDLIERLTSKHFQLSVKEVEDSVKETLTLMANSLAQGERIEVRGFGSFSLHYRAPRVGRNPKTGDRVELDGKYVPHFK
PGKALRERVNAANA

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family

Homologues:

Organism=Escherichia coli, GI1787141, Length=91, Percent_Identity=73.6263736263736, Blast_Score=145, Evalue=4e-37,
Organism=Escherichia coli, GI1790433, Length=90, Percent_Identity=36.6666666666667, Blast_Score=71, Evalue=1e-14,
Organism=Escherichia coli, GI1786644, Length=91, Percent_Identity=34.0659340659341, Blast_Score=66, Evalue=5e-13,
Organism=Escherichia coli, GI1788005, Length=94, Percent_Identity=34.0425531914894, Blast_Score=59, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IHFB_PSYIN (A1SYZ9)

Other databases:

- EMBL:   CP000510
- RefSeq:   YP_944313.1
- ProteinModelPortal:   A1SYZ9
- SMR:   A1SYZ9
- STRING:   A1SYZ9
- GeneID:   4623796
- GenomeReviews:   CP000510_GR
- KEGG:   pin:Ping_3012
- eggNOG:   COG0776
- HOGENOM:   HBG705085
- OMA:   NVPTFKI
- PhylomeDB:   A1SYZ9
- BioCyc:   PING357804:PING_3012-MONOMER
- GO:   GO:0005694
- GO:   GO:0006350
- HAMAP:   MF_00381
- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005685
- Gene3D:   G3DSA:4.10.520.10
- PRINTS:   PR01727
- SMART:   SM00411
- TIGRFAMs:   TIGR00988

Pfam domain/function: PF00216 Bac_DNA_binding; SSF47729 IHF_like_DNA_bnd

EC number: NA

Molecular weight: Translated: 10682; Mature: 10551

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKSDLIERLTSKHFQLSVKEVEDSVKETLTLMANSLAQGERIEVRGFGSFSLHYRAPRV
CCHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEECCCC
GRNPKTGDRVELDGKYVPHFKPGKALRERVNAANA
CCCCCCCCEEEECCEECCCCCCCHHHHHHHHCCCC
>Mature Secondary Structure 
TKSDLIERLTSKHFQLSVKEVEDSVKETLTLMANSLAQGERIEVRGFGSFSLHYRAPRV
CHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEECCCC
GRNPKTGDRVELDGKYVPHFKPGKALRERVNAANA
CCCCCCCCEEEECCEECCCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA