| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is ybbP [H]
Identifier: 119946578
GI number: 119946578
Start: 3645689
End: 3648121
Strand: Reverse
Name: ybbP [H]
Synonym: Ping_2957
Alternate gene names: 119946578
Gene position: 3648121-3645689 (Counterclockwise)
Preceding gene: 119946579
Following gene: 119946577
Centisome position: 80.01
GC content: 44.88
Gene sequence:
>2433_bases ATGGACAAGCGTAAAATGGCTTCCGGGCGGAAGATGGTAATACGTTGGAGTTGGCGTGAGATCTGGCAAGGGCAATTGTG GCCGGTCATGGCTGCGCTTACCTTGATTATTGCTTGTGTTGTGGCGCTATCAGCATTAGCTATTCGCGTTGAAAAAGTGA TGACAGATCATGGCCGTTCAATGATCGCAGCTGATTTGGTTTTCTCTTCAGCGAACCCGACACCTGAATTAATATTGACT AAGGCTGAACAACTCGGCTTAACAACGTCAGATCAAACCCGTTTTCAAACCATGGCATTTAGCGGCAGTAAGATGCAGTT AGTGAGCGTTAAAGCGGTGCAAAGCAGTTATCCGCTGCGCGGTGAGTTAATTTTAATCGGCTCGGGTGACGCGTCGAAAG GGTCTTTGCAACCGGGAGAGTTATGGATTGCTGAACGTTTGTTTTCTTTATTAGGGGTTAAAATTGGTGATCAGCTTGAT ATTGGCGATTTAAAATTAAAGGTCTCCGGGAAAATAGCGTCGGAGCCTGAACTGACCTATAACCCTTTTCGAACTATGCC CAGTGTGTTTATCCATCAATCTGATCTGGATAAAACGGGCGCGGTACAAGTAGGCAGCCGAGTACGATACCGGACTTTTT TTAAGGGCGGTGACAGTGAACTTAAGCTGCTGCAGAAAGTTTACCCGGTACAAGCGGGTGAACGCTGGATAAGTGAAGGC AATCAGGGGCGAACAGCCGATTTAATCATAAAAGCCAAACAATACCTGTCGCTGACTATTTTGATGGTGATCTTAATGGC AGCGGTCACCCTTGTGCTGACCTGCCAGCATTACGCCGATAGTCGGACCAATACGGTGGCGATGTTAAAAAGTATGGGCG CCGGTAGACGCTGGTTGCGTCAATGGTTATTAAGCCAAGTTGGTTTAATGTTTGCAGCGGCTATTATTTTAGGTTCACTA ATTGGCCTGGGTCTGGAGGCCCTGCTGCGTTTACCTTTGACAGGCATTTTACCGGATCAATTACCAAGCTATGGTTGGCA GCCTTTTGTTTTTGGCAGCGCGGTGGCATTGTTGATTGGTTTGCCTGCATTAGGAATACCGCTAATAAGGTTATTGGACA CATCGGCTATTGCAGTATTACAGGCTCAGGCTGTAAAACCCTCTAAAAAGGGATTGTGGTTAATCGCTGTGCCTGCTATT GCATTTTTACTTATGTATGGCGCGAATACCTTAGTATGGATGGTATTTGGCGGATTAATTATGCTCTTTGTGGTGCTTGC GAGTGCCAGTTATGTTTTATTGCATCTTCTCAGTAAAGCCAAGTGGGGGCCAGCTATGTCCCTTGCCTTAAGCCGTATTA AACGTTCTGCAAAAAGCAGTCTGATGCAGCTTGCCGCATTGTCGGGATCACTTATGCTGGTGGCGGTAATTTGGCTGGTA AGAACAGATTTATTAGGTGATTGGCAGCAGACCTTACCGGCCGATGCGCCAAATGTCTTTGCCATCAATATTGCCCCAAC CGACCAACAAGCCTATTTAAAAAAGTTAGATGATAATGATATTCCAAGATCTTCAGCTTATCCTATTATTCGCGGCCGCC TGACGGAAGTTAACGGTAAAGATGCAAAACAATATGAAGATAATGCCAATGACCATATTAACGCATTACATCGGGAATTA AACTTTACCTGGGTAACTGAGCTCCCTAAGGATAATCCAGTAGTTGCAGGGAAGTGGACAGATCAAGGAGGAGTTTCTAT CGAGCAAAGCTTAGCGGCAGATTTAGGGATTAAAGTTGGAGATAAATTAGGATTTATGGTTAATGGCCAACCCTTCAGCG TACCGGTAAATTCAATTCGTGAAGTGCAATGGCAAAGTATGAAGCCAAACTTTTACCTTATTTTTACCCCCGATATTGTT GAAGGTCTACCTGCTACCTGGTTAGTCAGTTTTCGTATTAACGATCAGCAGCTCCCTTTCCTGAATCAGCTTGGACGCGA TTACCAAACGGTCAGTTTATTAGATTTACGCAGCATGGGCGGCAAACTGCAAGCTATTTTAGGGCAAATCACCTGGTCAC TAACGGTGCTTGCGGGTGTTGGCGTGCTCAGCGGACTATTATTAATTTTTACTTTATTACGTTTAAGTTTGAATCAGCGG CAACGTGAAATTACATTATATCGAACATTAGGGGCAAGCAGGAAAAGAATCAGCCAAACCCTCTGGAGTGAATATGGGAT AATGGCCATTGCGGCAGGTTTTGTGGCCGTCGCCGGGGCTGAGTCAATCGTTTTTAGTTTGCTAAAATGGGGGTTTAAGT TAGAGCCGAGCTTACATCCTTTAATGTGGTTTACTTTGCCATTTTTAGCGCTGTTAGTGGTTTTTGCCAGCTTGATGAGT GTGATTAAGGGCTTGTTAAAACCCTTAAAGTAA
Upstream 100 bases:
>100_bases TCATGGCACGACGTTAGTATTAATAACCCATGACACTAATTTAGCCAAACGCTGCGATCGTACGCTCTCTATTCACGCCG GCCAGTTGCAGGAGGTCTAA
Downstream 100 bases:
>100_bases AAATTAAACCATTAATAGCAGGCATTGTACTGCTATTAATGCCTTTTGGAGACTAAGCACAGGCATTACCCGTACTATAC CCGCACCCTATTAAAGTTCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 810; Mature: 810
Protein sequence:
>810_residues MDKRKMASGRKMVIRWSWREIWQGQLWPVMAALTLIIACVVALSALAIRVEKVMTDHGRSMIAADLVFSSANPTPELILT KAEQLGLTTSDQTRFQTMAFSGSKMQLVSVKAVQSSYPLRGELILIGSGDASKGSLQPGELWIAERLFSLLGVKIGDQLD IGDLKLKVSGKIASEPELTYNPFRTMPSVFIHQSDLDKTGAVQVGSRVRYRTFFKGGDSELKLLQKVYPVQAGERWISEG NQGRTADLIIKAKQYLSLTILMVILMAAVTLVLTCQHYADSRTNTVAMLKSMGAGRRWLRQWLLSQVGLMFAAAIILGSL IGLGLEALLRLPLTGILPDQLPSYGWQPFVFGSAVALLIGLPALGIPLIRLLDTSAIAVLQAQAVKPSKKGLWLIAVPAI AFLLMYGANTLVWMVFGGLIMLFVVLASASYVLLHLLSKAKWGPAMSLALSRIKRSAKSSLMQLAALSGSLMLVAVIWLV RTDLLGDWQQTLPADAPNVFAINIAPTDQQAYLKKLDDNDIPRSSAYPIIRGRLTEVNGKDAKQYEDNANDHINALHREL NFTWVTELPKDNPVVAGKWTDQGGVSIEQSLAADLGIKVGDKLGFMVNGQPFSVPVNSIREVQWQSMKPNFYLIFTPDIV EGLPATWLVSFRINDQQLPFLNQLGRDYQTVSLLDLRSMGGKLQAILGQITWSLTVLAGVGVLSGLLLIFTLLRLSLNQR QREITLYRTLGASRKRISQTLWSEYGIMAIAAGFVAVAGAESIVFSLLKWGFKLEPSLHPLMWFTLPFLALLVVFASLMS VIKGLLKPLK
Sequences:
>Translated_810_residues MDKRKMASGRKMVIRWSWREIWQGQLWPVMAALTLIIACVVALSALAIRVEKVMTDHGRSMIAADLVFSSANPTPELILT KAEQLGLTTSDQTRFQTMAFSGSKMQLVSVKAVQSSYPLRGELILIGSGDASKGSLQPGELWIAERLFSLLGVKIGDQLD IGDLKLKVSGKIASEPELTYNPFRTMPSVFIHQSDLDKTGAVQVGSRVRYRTFFKGGDSELKLLQKVYPVQAGERWISEG NQGRTADLIIKAKQYLSLTILMVILMAAVTLVLTCQHYADSRTNTVAMLKSMGAGRRWLRQWLLSQVGLMFAAAIILGSL IGLGLEALLRLPLTGILPDQLPSYGWQPFVFGSAVALLIGLPALGIPLIRLLDTSAIAVLQAQAVKPSKKGLWLIAVPAI AFLLMYGANTLVWMVFGGLIMLFVVLASASYVLLHLLSKAKWGPAMSLALSRIKRSAKSSLMQLAALSGSLMLVAVIWLV RTDLLGDWQQTLPADAPNVFAINIAPTDQQAYLKKLDDNDIPRSSAYPIIRGRLTEVNGKDAKQYEDNANDHINALHREL NFTWVTELPKDNPVVAGKWTDQGGVSIEQSLAADLGIKVGDKLGFMVNGQPFSVPVNSIREVQWQSMKPNFYLIFTPDIV EGLPATWLVSFRINDQQLPFLNQLGRDYQTVSLLDLRSMGGKLQAILGQITWSLTVLAGVGVLSGLLLIFTLLRLSLNQR QREITLYRTLGASRKRISQTLWSEYGIMAIAAGFVAVAGAESIVFSLLKWGFKLEPSLHPLMWFTLPFLALLVVFASLMS VIKGLLKPLK >Mature_810_residues MDKRKMASGRKMVIRWSWREIWQGQLWPVMAALTLIIACVVALSALAIRVEKVMTDHGRSMIAADLVFSSANPTPELILT KAEQLGLTTSDQTRFQTMAFSGSKMQLVSVKAVQSSYPLRGELILIGSGDASKGSLQPGELWIAERLFSLLGVKIGDQLD IGDLKLKVSGKIASEPELTYNPFRTMPSVFIHQSDLDKTGAVQVGSRVRYRTFFKGGDSELKLLQKVYPVQAGERWISEG NQGRTADLIIKAKQYLSLTILMVILMAAVTLVLTCQHYADSRTNTVAMLKSMGAGRRWLRQWLLSQVGLMFAAAIILGSL IGLGLEALLRLPLTGILPDQLPSYGWQPFVFGSAVALLIGLPALGIPLIRLLDTSAIAVLQAQAVKPSKKGLWLIAVPAI AFLLMYGANTLVWMVFGGLIMLFVVLASASYVLLHLLSKAKWGPAMSLALSRIKRSAKSSLMQLAALSGSLMLVAVIWLV RTDLLGDWQQTLPADAPNVFAINIAPTDQQAYLKKLDDNDIPRSSAYPIIRGRLTEVNGKDAKQYEDNANDHINALHREL NFTWVTELPKDNPVVAGKWTDQGGVSIEQSLAADLGIKVGDKLGFMVNGQPFSVPVNSIREVQWQSMKPNFYLIFTPDIV EGLPATWLVSFRINDQQLPFLNQLGRDYQTVSLLDLRSMGGKLQAILGQITWSLTVLAGVGVLSGLLLIFTLLRLSLNQR QREITLYRTLGASRKRISQTLWSEYGIMAIAAGFVAVAGAESIVFSLLKWGFKLEPSLHPLMWFTLPFLALLVVFASLMS VIKGLLKPLK
Specific function: Unknown
COG id: COG3127
COG function: function code Q; Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ABC-4 integral membrane protein family [H]
Homologues:
Organism=Escherichia coli, GI1786704, Length=801, Percent_Identity=35.0811485642946, Blast_Score=415, Evalue=1e-117,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003838 [H]
Pfam domain/function: PF02687 FtsX [H]
EC number: NA
Molecular weight: Translated: 89008; Mature: 89008
Theoretical pI: Translated: 10.30; Mature: 10.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKRKMASGRKMVIRWSWREIWQGQLWPVMAALTLIIACVVALSALAIRVEKVMTDHGRS CCCCCCCCCCEEEEEECHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH MIAADLVFSSANPTPELILTKAEQLGLTTSDQTRFQTMAFSGSKMQLVSVKAVQSSYPLR HHHHHHHCCCCCCCHHHEEECHHHHCCCCCCCHHHHHEEECCCCEEEEEEEHHHCCCCCC GELILIGSGDASKGSLQPGELWIAERLFSLLGVKIGDQLDIGDLKLKVSGKIASEPELTY EEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCC NPFRTMPSVFIHQSDLDKTGAVQVGSRVRYRTFFKGGDSELKLLQKVYPVQAGERWISEG CHHHHCCHHHEECCCCCCCCCHHHCCCCEEEEEECCCCHHHHHHHHHHCCHHHHHHHHCC NQGRTADLIIKAKQYLSLTILMVILMAAVTLVLTCQHYADSRTNTVAMLKSMGAGRRWLR CCCCCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHH QWLLSQVGLMFAAAIILGSLIGLGLEALLRLPLTGILPDQLPSYGWQPFVFGSAVALLIG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHC LPALGIPLIRLLDTSAIAVLQAQAVKPSKKGLWLIAVPAIAFLLMYGANTLVWMVFGGLI CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHH MLFVVLASASYVLLHLLSKAKWGPAMSLALSRIKRSAKSSLMQLAALSGSLMLVAVIWLV HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH RTDLLGDWQQTLPADAPNVFAINIAPTDQQAYLKKLDDNDIPRSSAYPIIRGRLTEVNGK HHHHHCCHHHHCCCCCCCEEEEEECCCCHHHHHHHCCCCCCCCCCCCCEEECEEECCCCC DAKQYEDNANDHINALHRELNFTWVTELPKDNPVVAGKWTDQGGVSIEQSLAADLGIKVG CCHHHCCCCCHHHHHHHHHCCCEEEECCCCCCCEEEEECCCCCCCCHHHHHHHHCCCEEC DKLGFMVNGQPFSVPVNSIREVQWQSMKPNFYLIFTPDIVEGLPATWLVSFRINDQQLPF CCCCEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCHHHCCCCCEEEEEEEECCCCCCH LNQLGRDYQTVSLLDLRSMGGKLQAILGQITWSLTVLAGVGVLSGLLLIFTLLRLSLNQR HHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QREITLYRTLGASRKRISQTLWSEYGIMAIAAGFVAVAGAESIVFSLLKWGFKLEPSLHP HHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH LMWFTLPFLALLVVFASLMSVIKGLLKPLK HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MDKRKMASGRKMVIRWSWREIWQGQLWPVMAALTLIIACVVALSALAIRVEKVMTDHGRS CCCCCCCCCCEEEEEECHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH MIAADLVFSSANPTPELILTKAEQLGLTTSDQTRFQTMAFSGSKMQLVSVKAVQSSYPLR HHHHHHHCCCCCCCHHHEEECHHHHCCCCCCCHHHHHEEECCCCEEEEEEEHHHCCCCCC GELILIGSGDASKGSLQPGELWIAERLFSLLGVKIGDQLDIGDLKLKVSGKIASEPELTY EEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCC NPFRTMPSVFIHQSDLDKTGAVQVGSRVRYRTFFKGGDSELKLLQKVYPVQAGERWISEG CHHHHCCHHHEECCCCCCCCCHHHCCCCEEEEEECCCCHHHHHHHHHHCCHHHHHHHHCC NQGRTADLIIKAKQYLSLTILMVILMAAVTLVLTCQHYADSRTNTVAMLKSMGAGRRWLR CCCCCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHH QWLLSQVGLMFAAAIILGSLIGLGLEALLRLPLTGILPDQLPSYGWQPFVFGSAVALLIG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHC LPALGIPLIRLLDTSAIAVLQAQAVKPSKKGLWLIAVPAIAFLLMYGANTLVWMVFGGLI CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHH MLFVVLASASYVLLHLLSKAKWGPAMSLALSRIKRSAKSSLMQLAALSGSLMLVAVIWLV HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH RTDLLGDWQQTLPADAPNVFAINIAPTDQQAYLKKLDDNDIPRSSAYPIIRGRLTEVNGK HHHHHCCHHHHCCCCCCCEEEEEECCCCHHHHHHHCCCCCCCCCCCCCEEECEEECCCCC DAKQYEDNANDHINALHRELNFTWVTELPKDNPVVAGKWTDQGGVSIEQSLAADLGIKVG CCHHHCCCCCHHHHHHHHHCCCEEEECCCCCCCEEEEECCCCCCCCHHHHHHHHCCCEEC DKLGFMVNGQPFSVPVNSIREVQWQSMKPNFYLIFTPDIVEGLPATWLVSFRINDQQLPF CCCCEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCHHHCCCCCEEEEEEEECCCCCCH LNQLGRDYQTVSLLDLRSMGGKLQAILGQITWSLTVLAGVGVLSGLLLIFTLLRLSLNQR HHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QREITLYRTLGASRKRISQTLWSEYGIMAIAAGFVAVAGAESIVFSLLKWGFKLEPSLHP HHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH LMWFTLPFLALLVVFASLMSVIKGLLKPLK HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]