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The map label for this gene is syd

Identifier: 119946398

GI number: 119946398

Start: 3409989

End: 3410543

Strand: Reverse

Name: syd

Synonym: Ping_2772

Alternate gene names: 119946398

Gene position: 3410543-3409989 (Counterclockwise)

Preceding gene: 119946404

Following gene: 119946391

Centisome position: 74.8

GC content: 40.54

Gene sequence:

>555_bases
ATGAATCATACAACGCAAACACAGCTATTCGATTTTTTCGAACGTTTTAAAGCCCATTGGCAAACACAAAAAAAATCATT
ACCTCAAGCGATTTTTGAGCCGCAATGGATTTCACCCTGCCAGATAGGAGAGGTTGAAAACCAACTTATTTTCTGGTCAC
CCATTAAGCGTGAACCCGCTCTTGATATGAGCAATATTGAGCAGGCACTGGATATCAAGCTGCATCCCAGTATTGTGGAT
TTTTTCTGCTCTGCCTATTCGGCCGGTTTACCTGCTGTTTATCAGGATCATCCAATCGAGTTGATCCAAGCCTGGAATGA
TGAGGATTTTAATCTCTTACAAGAAAATATGCTTGCCCATTTTATGATGCAAAAACGTTTAAAACAACCGGCATCCATGT
TTATTGCCAGTTGTTCCGATGAAATGCAGATAGTGTCGGTGTTAAATGCAACGGGTGAAGTACAGTTGGAGACATTAGGA
AAAGGGCAGGAAGCTATTTTAGCAGAAAATTTAGCGGATTTTTTGGCTACTTTAACCCCAGTCATTATTGAGTAG

Upstream 100 bases:

>100_bases
ATCTTGATCGTAGAGTGGTTTATTAGTCATTTTTTTCGCTTTTATTTTTTAAAACAATACAATGGCAGTATTGTAAACAA
AATAAAGAATTATTCGAGCT

Downstream 100 bases:

>100_bases
TTAGGTGGCGATTAACTCCTAAAATAAGACTTAGTCTATTTTAGTAGTTAATCGCGGTTGTTATCTGTTACTGTTTGAGT
GTCAAATAACCTGTCCAAAT

Product: Syd family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MNHTTQTQLFDFFERFKAHWQTQKKSLPQAIFEPQWISPCQIGEVENQLIFWSPIKREPALDMSNIEQALDIKLHPSIVD
FFCSAYSAGLPAVYQDHPIELIQAWNDEDFNLLQENMLAHFMMQKRLKQPASMFIASCSDEMQIVSVLNATGEVQLETLG
KGQEAILAENLADFLATLTPVIIE

Sequences:

>Translated_184_residues
MNHTTQTQLFDFFERFKAHWQTQKKSLPQAIFEPQWISPCQIGEVENQLIFWSPIKREPALDMSNIEQALDIKLHPSIVD
FFCSAYSAGLPAVYQDHPIELIQAWNDEDFNLLQENMLAHFMMQKRLKQPASMFIASCSDEMQIVSVLNATGEVQLETLG
KGQEAILAENLADFLATLTPVIIE
>Mature_184_residues
MNHTTQTQLFDFFERFKAHWQTQKKSLPQAIFEPQWISPCQIGEVENQLIFWSPIKREPALDMSNIEQALDIKLHPSIVD
FFCSAYSAGLPAVYQDHPIELIQAWNDEDFNLLQENMLAHFMMQKRLKQPASMFIASCSDEMQIVSVLNATGEVQLETLG
KGQEAILAENLADFLATLTPVIIE

Specific function: Interacts with the secY protein in vivo. May bind preferentially to an uncomplexed state of secY, thus functioning either as a chelating agent for excess secY in the cell or as a regulatory factor that negatively controls the translocase function

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Note=Loosely associated with the Cytoplasmic side of the inner membrane, probably via secY (By similarity)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Syd family

Homologues:

Organism=Escherichia coli, GI1789157, Length=182, Percent_Identity=35.1648351648352, Blast_Score=124, Evalue=5e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SYDP_PSYIN (A1SYB4)

Other databases:

- EMBL:   CP000510
- RefSeq:   YP_944078.1
- STRING:   A1SYB4
- GeneID:   4627057
- GenomeReviews:   CP000510_GR
- KEGG:   pin:Ping_2772
- eggNOG:   NOG05748
- HOGENOM:   HBG298615
- OMA:   DEQWPSP
- PhylomeDB:   A1SYB4
- BioCyc:   PING357804:PING_2772-MONOMER
- HAMAP:   MF_01104
- InterPro:   IPR009948

Pfam domain/function: PF07348 Syd

EC number: NA

Molecular weight: Translated: 21028; Mature: 21028

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHTTQTQLFDFFERFKAHWQTQKKSLPQAIFEPQWISPCQIGEVENQLIFWSPIKREPA
CCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCC
LDMSNIEQALDIKLHPSIVDFFCSAYSAGLPAVYQDHPIELIQAWNDEDFNLLQENMLAH
CCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHH
FMMQKRLKQPASMFIASCSDEMQIVSVLNATGEVQLETLGKGQEAILAENLADFLATLTP
HHHHHHHHCHHHHHHHHCCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHH
VIIE
HHCC
>Mature Secondary Structure
MNHTTQTQLFDFFERFKAHWQTQKKSLPQAIFEPQWISPCQIGEVENQLIFWSPIKREPA
CCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCC
LDMSNIEQALDIKLHPSIVDFFCSAYSAGLPAVYQDHPIELIQAWNDEDFNLLQENMLAH
CCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHH
FMMQKRLKQPASMFIASCSDEMQIVSVLNATGEVQLETLGKGQEAILAENLADFLATLTP
HHHHHHHHCHHHHHHHHCCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHH
VIIE
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA