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The map label for this gene is phnR [H]

Identifier: 119946369

GI number: 119946369

Start: 3365214

End: 3366005

Strand: Reverse

Name: phnR [H]

Synonym: Ping_2743

Alternate gene names: 119946369

Gene position: 3366005-3365214 (Counterclockwise)

Preceding gene: 119946370

Following gene: 119946368

Centisome position: 73.82

GC content: 41.92

Gene sequence:

>792_bases
GTGATATCAATTCCACTAATTAAGTGGCCTGTTTATAAACTCGGTCAGAATGATTTTATTAAAGGAAAAACGGTGCAGTA
TTTAAAAATAAAAGAAACCATTGTTGAACAAATTGACAGCGGACTGTTGCCCGCAAGACAAAAGTTACCCTCAGAGCGTA
AATTAGCCGAGGCATTTTCCACAACACGCGTAACAATGCGCGCTGCACTTTCATCTCTTGAAGCTGAAGCGCGTCTTTAT
CGGGAAGACAGGCGCGGCTGGTTTGTTTGCCCGGAACCTTTACGTTATGACCCAAGTTCAACTTTTAATTTTATGAGCAT
GGCAAACAATCAGGGCCGTGCAGGATTCAGTAAATTGATTGAAGCCAGAAAAGTGCTCGCTACTAAGCAAGCAGCCGCAT
TATTACAGGTGCCTATGCTAACTGATATTTACCATATAAAGCGCGTCCGCTTTTTAGAAGATAGGCCGGTGGTTTACGTC
AGTAATTTTATTAAAGCGGCCCATTTTCCAGATTTATTGGATCATGATTTTACACCTTCGCTGACGGACGTTTATTTAAA
ATATTATGCAGTGCGTTATCAAACCACTCATTATCGCGTCAGTACCACCTGTTTATTTGGCGAAATTGCACAGGTATTAC
GTGCAACGCCTGGTAGCCCCGCGATGCTGGTGGAGCGTATTAATTACGATCAAAATGGTCTGTTAATTGATTGTGATTTA
GAGTATTGGCGGCATGATGCAATTTGCATTGAATCAACTGCACAATTAAATGCAGAATCAACCCTCGGCTGA

Upstream 100 bases:

>100_bases
CGATGGCGGTAATGATTATGTGCGCTGCGCTGTTTGCTAAAATAGTGCATTTACTGCTTTATAATTTTTTTGAAAAAAGC
ACTCAGGGTTGGCGACAAAA

Downstream 100 bases:

>100_bases
GTGTTCGCTGGGTGCTTGTAAAGGGTGCTTGTAAATGGTGTTTGGGAAAGTCTGTTAAACAATCAGTCTGATCGCTCTGC
TTTCAGCTGCTTCGGGCAGT

Product: transcriptional regulator, GntR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MISIPLIKWPVYKLGQNDFIKGKTVQYLKIKETIVEQIDSGLLPARQKLPSERKLAEAFSTTRVTMRAALSSLEAEARLY
REDRRGWFVCPEPLRYDPSSTFNFMSMANNQGRAGFSKLIEARKVLATKQAAALLQVPMLTDIYHIKRVRFLEDRPVVYV
SNFIKAAHFPDLLDHDFTPSLTDVYLKYYAVRYQTTHYRVSTTCLFGEIAQVLRATPGSPAMLVERINYDQNGLLIDCDL
EYWRHDAICIESTAQLNAESTLG

Sequences:

>Translated_263_residues
MISIPLIKWPVYKLGQNDFIKGKTVQYLKIKETIVEQIDSGLLPARQKLPSERKLAEAFSTTRVTMRAALSSLEAEARLY
REDRRGWFVCPEPLRYDPSSTFNFMSMANNQGRAGFSKLIEARKVLATKQAAALLQVPMLTDIYHIKRVRFLEDRPVVYV
SNFIKAAHFPDLLDHDFTPSLTDVYLKYYAVRYQTTHYRVSTTCLFGEIAQVLRATPGSPAMLVERINYDQNGLLIDCDL
EYWRHDAICIESTAQLNAESTLG
>Mature_263_residues
MISIPLIKWPVYKLGQNDFIKGKTVQYLKIKETIVEQIDSGLLPARQKLPSERKLAEAFSTTRVTMRAALSSLEAEARLY
REDRRGWFVCPEPLRYDPSSTFNFMSMANNQGRAGFSKLIEARKVLATKQAAALLQVPMLTDIYHIKRVRFLEDRPVVYV
SNFIKAAHFPDLLDHDFTPSLTDVYLKYYAVRYQTTHYRVSTTCLFGEIAQVLRATPGSPAMLVERINYDQNGLLIDCDL
EYWRHDAICIESTAQLNAESTLG

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790304, Length=221, Percent_Identity=31.6742081447964, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI87082252, Length=207, Percent_Identity=24.6376811594203, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788418, Length=224, Percent_Identity=25, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR017722
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 30093; Mature: 30093

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISIPLIKWPVYKLGQNDFIKGKTVQYLKIKETIVEQIDSGLLPARQKLPSERKLAEAFS
CCCCCEECCCHHHCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHH
TTRVTMRAALSSLEAEARLYREDRRGWFVCPEPLRYDPSSTFNFMSMANNQGRAGFSKLI
HHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHCCCCCCHHHHHHH
EARKVLATKQAAALLQVPMLTDIYHIKRVRFLEDRPVVYVSNFIKAAHFPDLLDHDFTPS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCHHHCCCCCCC
LTDVYLKYYAVRYQTTHYRVSTTCLFGEIAQVLRATPGSPAMLVERINYDQNGLLIDCDL
HHHHHHHHHHHEEEEEEEEEEHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCEEEEECH
EYWRHDAICIESTAQLNAESTLG
HHHCCCCEEEECHHHCCCCCCCC
>Mature Secondary Structure
MISIPLIKWPVYKLGQNDFIKGKTVQYLKIKETIVEQIDSGLLPARQKLPSERKLAEAFS
CCCCCEECCCHHHCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHH
TTRVTMRAALSSLEAEARLYREDRRGWFVCPEPLRYDPSSTFNFMSMANNQGRAGFSKLI
HHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHCCCCCCHHHHHHH
EARKVLATKQAAALLQVPMLTDIYHIKRVRFLEDRPVVYVSNFIKAAHFPDLLDHDFTPS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCHHHCCCCCCC
LTDVYLKYYAVRYQTTHYRVSTTCLFGEIAQVLRATPGSPAMLVERINYDQNGLLIDCDL
HHHHHHHHHHHEEEEEEEEEEHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCEEEEECH
EYWRHDAICIESTAQLNAESTLG
HHHCCCCEEEECHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA