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The map label for this gene is araQ [H]

Identifier: 119946150

GI number: 119946150

Start: 3066896

End: 3067732

Strand: Direct

Name: araQ [H]

Synonym: Ping_2510

Alternate gene names: 119946150

Gene position: 3066896-3067732 (Clockwise)

Preceding gene: 119946149

Following gene: 119946151

Centisome position: 67.26

GC content: 41.46

Gene sequence:

>837_bases
ATGAACACGCGTAATATTCAAACTTTTATTTTGGGCGCTATGGTTGTATTTGCAGCTCTTTGGCTGGTCCCAATGTTGTG
GATGTTCTCACTTTCATTTCAACCAAATGCGCTTTTAGCACGCGATACTGCCGATACACTCTTAGGTCTGTTTCCCGCAC
AGTTTACTTTGGATAACTACATTCACCTATTTAGCATGAGTAAAGTGCCGCAATGGTTTTGGAATAGTGTAATTGTGTCC
GGTATGACAACGATTTTGGTGCTATTAATTTCAAGCATTGCGGGGTTTGCCTTTGCACGTTTGAATTTCCCCGGGAAAAA
AGTGATGTATCCGCTGGTACTTGCGGGTCTGATGATTCCAGAACAAGCGGTCTTTATCCCTTTGTATACCTTCTTTTCTG
ATCTGGGTTGGCACAACTCATATGCCGGACTTATTATTCCTCGTTTAAGCCTGCCAATTGGTGTGTTTATGATGACGCAG
TATTTTAAAGAAGTGCCAAATGAACTTGAGGAAGCGGCTAAATTAGATGGTGCAAGTATTCCAAAGCAGTTCCTATATAT
CTTCCTGCCACTTGCCCGTCCAGTGCTTACGACATTAGGCATTATTACTTTTCTATTTTCCTGGAATGATTATCTATGGC
CACTCGTTTCAGCTCAACAACCTGAAATGTTTACTATTACGGTTGGTTTAGCATCAATTCAGGGTAATTTTGCGCAATCA
GAAGGCTTAGGCAGTGTAATGGCATCGGGGGCATTTGCTTCACTACCGGTTATCATTCTCTACATTATCTTCCAAAAACA
TATTGTAAAAGGGTTCGCCTTAGGCGGAGAAAAATAA

Upstream 100 bases:

>100_bases
CGAATGTGGGTTATGCATCGGCAATGGCCATTATGCTGTTTATTATTATGATGACCTTCAGCTTAATTCAGGCAAAGGTA
AGTAAAAGAGGAGAGCAGTA

Downstream 100 bases:

>100_bases
CGACATTGAGAAAAACAAAAGCATGAAAAAAGTGGTATTAACTATTAAAGGGAACATAAATATGAAAAAAGTAACATTAA
CCATCGCGCTAGCTTTATTT

Product: ABC sugar transporter inner membrane binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MNTRNIQTFILGAMVVFAALWLVPMLWMFSLSFQPNALLARDTADTLLGLFPAQFTLDNYIHLFSMSKVPQWFWNSVIVS
GMTTILVLLISSIAGFAFARLNFPGKKVMYPLVLAGLMIPEQAVFIPLYTFFSDLGWHNSYAGLIIPRLSLPIGVFMMTQ
YFKEVPNELEEAAKLDGASIPKQFLYIFLPLARPVLTTLGIITFLFSWNDYLWPLVSAQQPEMFTITVGLASIQGNFAQS
EGLGSVMASGAFASLPVIILYIIFQKHIVKGFALGGEK

Sequences:

>Translated_278_residues
MNTRNIQTFILGAMVVFAALWLVPMLWMFSLSFQPNALLARDTADTLLGLFPAQFTLDNYIHLFSMSKVPQWFWNSVIVS
GMTTILVLLISSIAGFAFARLNFPGKKVMYPLVLAGLMIPEQAVFIPLYTFFSDLGWHNSYAGLIIPRLSLPIGVFMMTQ
YFKEVPNELEEAAKLDGASIPKQFLYIFLPLARPVLTTLGIITFLFSWNDYLWPLVSAQQPEMFTITVGLASIQGNFAQS
EGLGSVMASGAFASLPVIILYIIFQKHIVKGFALGGEK
>Mature_278_residues
MNTRNIQTFILGAMVVFAALWLVPMLWMFSLSFQPNALLARDTADTLLGLFPAQFTLDNYIHLFSMSKVPQWFWNSVIVS
GMTTILVLLISSIAGFAFARLNFPGKKVMYPLVLAGLMIPEQAVFIPLYTFFSDLGWHNSYAGLIIPRLSLPIGVFMMTQ
YFKEVPNELEEAAKLDGASIPKQFLYIFLPLARPVLTTLGIITFLFSWNDYLWPLVSAQQPEMFTITVGLASIQGNFAQS
EGLGSVMASGAFASLPVIILYIIFQKHIVKGFALGGEK

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=240, Percent_Identity=29.1666666666667, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1787571, Length=271, Percent_Identity=28.7822878228782, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1790464, Length=214, Percent_Identity=30.3738317757009, Blast_Score=102, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30940; Mature: 30940

Theoretical pI: Translated: 7.74; Mature: 7.74

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTRNIQTFILGAMVVFAALWLVPMLWMFSLSFQPNALLARDTADTLLGLFPAQFTLDNY
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHH
IHLFSMSKVPQWFWNSVIVSGMTTILVLLISSIAGFAFARLNFPGKKVMYPLVLAGLMIP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
EQAVFIPLYTFFSDLGWHNSYAGLIIPRLSLPIGVFMMTQYFKEVPNELEEAAKLDGASI
CHHHHHHHHHHHHHHCCCCCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PKQFLYIFLPLARPVLTTLGIITFLFSWNDYLWPLVSAQQPEMFTITVGLASIQGNFAQS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCEEEEEEEHHHHCCCCHHH
EGLGSVMASGAFASLPVIILYIIFQKHIVKGFALGGEK
CCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNTRNIQTFILGAMVVFAALWLVPMLWMFSLSFQPNALLARDTADTLLGLFPAQFTLDNY
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHH
IHLFSMSKVPQWFWNSVIVSGMTTILVLLISSIAGFAFARLNFPGKKVMYPLVLAGLMIP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
EQAVFIPLYTFFSDLGWHNSYAGLIIPRLSLPIGVFMMTQYFKEVPNELEEAAKLDGASI
CHHHHHHHHHHHHHHCCCCCCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PKQFLYIFLPLARPVLTTLGIITFLFSWNDYLWPLVSAQQPEMFTITVGLASIQGNFAQS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCEEEEEEEHHHHCCCCHHH
EGLGSVMASGAFASLPVIILYIIFQKHIVKGFALGGEK
CCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]