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The map label for this gene is yajD [H]

Identifier: 119946101

GI number: 119946101

Start: 2997381

End: 2997713

Strand: Reverse

Name: yajD [H]

Synonym: Ping_2451

Alternate gene names: 119946101

Gene position: 2997713-2997381 (Counterclockwise)

Preceding gene: 119946104

Following gene: 119946100

Centisome position: 65.75

GC content: 40.24

Gene sequence:

>333_bases
ATGGCTTATATACCCAGTAATTATAAAAGTTTAGAAAGCGATTATCGAGATAAAGCATTAAAATTATTTCCTTGGGTCTG
TGGAAAGTGTGCGCGTGAATTTGTTTATTCAAATCTGCGCGAGTTAACTGTCCATCATGTTGACCATGACCATGCCAATA
ATCCGGCAGATGGCAGCAACTGGGAGTTATTATGTATCTATTGTCACGACCATGAACATGATAAATATACTCAGGCTGAC
CTCTACGGCAGCAGCGTTAAGGCGGGTGACGATGAGCACGTGAGTGCCACCTATAATCCCTTTGCGGATTTACTGAGTAA
AATAAAAAAATAA

Upstream 100 bases:

>100_bases
TTGTTATTGGAAAGATTATTGAGCATTTATAAAATGACTATTCACTACAGAGCTTAAGCGTTAGAATATTCACACTAATC
AAGAACAGTGGAAGGTACCA

Downstream 100 bases:

>100_bases
TTTTATGAATGTTTGTTTAATAACTTACTCTGCTCCGCACATTGAAACTCGCATTTACAGGCTGCATGGGTATAATCGCT
TTTTTTATTGAGACCTAGAG

Product: HNH endonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 110; Mature: 109

Protein sequence:

>110_residues
MAYIPSNYKSLESDYRDKALKLFPWVCGKCAREFVYSNLRELTVHHVDHDHANNPADGSNWELLCIYCHDHEHDKYTQAD
LYGSSVKAGDDEHVSATYNPFADLLSKIKK

Sequences:

>Translated_110_residues
MAYIPSNYKSLESDYRDKALKLFPWVCGKCAREFVYSNLRELTVHHVDHDHANNPADGSNWELLCIYCHDHEHDKYTQAD
LYGSSVKAGDDEHVSATYNPFADLLSKIKK
>Mature_109_residues
AYIPSNYKSLESDYRDKALKLFPWVCGKCAREFVYSNLRELTVHHVDHDHANNPADGSNWELLCIYCHDHEHDKYTQADL
YGSSVKAGDDEHVSATYNPFADLLSKIKK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786611, Length=113, Percent_Identity=69.9115044247788, Blast_Score=174, Evalue=8e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002711
- InterPro:   IPR003615
- InterPro:   IPR015880 [H]

Pfam domain/function: PF01844 HNH [H]

EC number: NA

Molecular weight: Translated: 12663; Mature: 12532

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYIPSNYKSLESDYRDKALKLFPWVCGKCAREFVYSNLRELTVHHVDHDHANNPADGSN
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
WELLCIYCHDHEHDKYTQADLYGSSVKAGDDEHVSATYNPFADLLSKIKK
EEEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure 
AYIPSNYKSLESDYRDKALKLFPWVCGKCAREFVYSNLRELTVHHVDHDHANNPADGSN
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
WELLCIYCHDHEHDKYTQADLYGSSVKAGDDEHVSATYNPFADLLSKIKK
EEEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]