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The map label for this gene is sodB [H]

Identifier: 119946098

GI number: 119946098

Start: 2995397

End: 2995978

Strand: Reverse

Name: sodB [H]

Synonym: Ping_2448

Alternate gene names: 119946098

Gene position: 2995978-2995397 (Counterclockwise)

Preceding gene: 119946100

Following gene: 119946096

Centisome position: 65.71

GC content: 39.69

Gene sequence:

>582_bases
ATGGCTTTTGAATTACCAGCATTACCCTTTGCAATCGATGCGTTAGAACCACACATTTCTGCTGAGACTCTTGAATTTCA
TCACGGCAAACATCATGCAACTTATGTTTCAAAATTAAATGGGCTAGTTGAAGGTACTGATTTGGCTGAAAAATCATTAG
AAGATATCATTAAATCTTCTAAAGGACCTCTGTTTAACAATGCAGCACAAGTTTGGAACCATACGTTCTACTGGAACTGT
CTGGCACCTAATGCGGGTGGCGAACCTACTGGTGCTGTTGCAGATGCAATTAATTCAAGTTTTGGTTCGTTTGCAGAATT
CAAAGCAGCTTGGAATGATCGAGCAGTTAATAACTTTGGTTCATCGTGGACTTGGCTTGTGAAAAAAGAAGACGGTTCAC
TGGATATTGTTAACACATCAAATGCAGCTACCCCATTAACAGACGCAACAGTAACACCACTATTGACTGTTGATCTATGG
GAACATGCATATTACATCGATTACCGTAACGCTCGTCCTAACTACTTAAATGGTTTCTGGGCATTAGTTAACTGGGATTT
TGTGGCTAAAAACCTAGCATAA

Upstream 100 bases:

>100_bases
TTCTTGGGGACTATTACAATAAGTTAAGATCAAAAATGATAGTAATAATCCTATCACTCATAACTATATAAATTAACTAT
ATAAATTGGAGATTACAAAC

Downstream 100 bases:

>100_bases
TTAACAGCTTTATTTTATCTGCATGCTGCCCCTTTAAATCTTTGAAGAGAGCCAGCTAAGCAGTTCGGCTGTTGTTAATA
ATAAAAACCTTAATTTTTAT

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MAFELPALPFAIDALEPHISAETLEFHHGKHHATYVSKLNGLVEGTDLAEKSLEDIIKSSKGPLFNNAAQVWNHTFYWNC
LAPNAGGEPTGAVADAINSSFGSFAEFKAAWNDRAVNNFGSSWTWLVKKEDGSLDIVNTSNAATPLTDATVTPLLTVDLW
EHAYYIDYRNARPNYLNGFWALVNWDFVAKNLA

Sequences:

>Translated_193_residues
MAFELPALPFAIDALEPHISAETLEFHHGKHHATYVSKLNGLVEGTDLAEKSLEDIIKSSKGPLFNNAAQVWNHTFYWNC
LAPNAGGEPTGAVADAINSSFGSFAEFKAAWNDRAVNNFGSSWTWLVKKEDGSLDIVNTSNAATPLTDATVTPLLTVDLW
EHAYYIDYRNARPNYLNGFWALVNWDFVAKNLA
>Mature_192_residues
AFELPALPFAIDALEPHISAETLEFHHGKHHATYVSKLNGLVEGTDLAEKSLEDIIKSSKGPLFNNAAQVWNHTFYWNCL
APNAGGEPTGAVADAINSSFGSFAEFKAAWNDRAVNNFGSSWTWLVKKEDGSLDIVNTSNAATPLTDATVTPLLTVDLWE
HAYYIDYRNARPNYLNGFWALVNWDFVAKNLA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=197, Percent_Identity=41.6243654822335, Blast_Score=153, Evalue=8e-38,
Organism=Homo sapiens, GI67782305, Length=197, Percent_Identity=41.6243654822335, Blast_Score=153, Evalue=8e-38,
Organism=Homo sapiens, GI67782309, Length=189, Percent_Identity=35.978835978836, Blast_Score=114, Evalue=5e-26,
Organism=Escherichia coli, GI1787946, Length=193, Percent_Identity=74.6113989637306, Blast_Score=300, Evalue=3e-83,
Organism=Escherichia coli, GI1790342, Length=206, Percent_Identity=39.8058252427184, Blast_Score=150, Evalue=5e-38,
Organism=Caenorhabditis elegans, GI17569479, Length=192, Percent_Identity=37.5, Blast_Score=131, Evalue=2e-31,
Organism=Caenorhabditis elegans, GI17506561, Length=192, Percent_Identity=37.5, Blast_Score=131, Evalue=2e-31,
Organism=Saccharomyces cerevisiae, GI6321796, Length=202, Percent_Identity=36.6336633663366, Blast_Score=118, Evalue=6e-28,
Organism=Drosophila melanogaster, GI17136812, Length=190, Percent_Identity=39.4736842105263, Blast_Score=129, Evalue=1e-30,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 21317; Mature: 21186

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFELPALPFAIDALEPHISAETLEFHHGKHHATYVSKLNGLVEGTDLAEKSLEDIIKSS
CCCCCCCCCEEECCCCCCCCCHHEHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC
KGPLFNNAAQVWNHTFYWNCLAPNAGGEPTGAVADAINSSFGSFAEFKAAWNDRAVNNFG
CCCCCCCHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCHHHCCC
SSWTWLVKKEDGSLDIVNTSNAATPLTDATVTPLLTVDLWEHAYYIDYRNARPNYLNGFW
CCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCEE
ALVNWDFVAKNLA
EEEEHHHHHHCCC
>Mature Secondary Structure 
AFELPALPFAIDALEPHISAETLEFHHGKHHATYVSKLNGLVEGTDLAEKSLEDIIKSS
CCCCCCCCEEECCCCCCCCCHHEHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC
KGPLFNNAAQVWNHTFYWNCLAPNAGGEPTGAVADAINSSFGSFAEFKAAWNDRAVNNFG
CCCCCCCHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCHHHCCC
SSWTWLVKKEDGSLDIVNTSNAATPLTDATVTPLLTVDLWEHAYYIDYRNARPNYLNGFW
CCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCEE
ALVNWDFVAKNLA
EEEEHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3542995 [H]