| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is sbcB [H]
Identifier: 119946086
GI number: 119946086
Start: 2984434
End: 2985894
Strand: Direct
Name: sbcB [H]
Synonym: Ping_2436
Alternate gene names: 119946086
Gene position: 2984434-2985894 (Clockwise)
Preceding gene: 119946085
Following gene: 119946087
Centisome position: 65.45
GC content: 40.52
Gene sequence:
>1461_bases ATGAGTAATTCAGCACAAGAAACAACACAAAAAAACACCGGCGATCAGCCTACGTTATACTGGCACGATTATGAAACCTT TGGACTTAATCCTGGAACAGATCGCCCTGCTCAATTTGCCGGTATTCGTACCGATCTCGATTTAAATATTATCTCTGAAC CTGATGAATGGTACTGCCGACCGCCCAATGACTACCTTCCAAATCCTGAAGCCTGCTTAATTACCGGGATCACACCACAA CGTGCATTACAAAAAGGCATGGTAGAAAGTGAGTTTATTGCGCTTATTAATCAACGGTTCAGCCAGAAAAACACCTGTGT TGTGGGTTATAACAATATACGTTTTGATGATGAAATAACGCGCTTTACGCTGTATCGAAATTTTCGCGATCCTTATCAGC GTGAATGGAAAAATGGCTGTTCGCGCTGGGATATTATCGATCTGGTAAGAGCTTGTTATGCTTTGCGTCCTGAGGGTATA AATTGGCCCGTCGATGAGAATGATGCACCCTCCTTTCGTTTAGAGTTGTTAACCAAAGAAAATGGCCTCGCGCACCAACA AGCGCATGATGCAATGTCAGATGTTTATGCCACCATTGCCATGGCAAAGTTAATAAAAGAAACACATCCTAAGCTCTATG ATTATTTCTTTGGCCTGCGTAAAAAAAATAATGTTATGGCGCAACTTAAACTGGGGAGTAATACACCCGTAGTGCATGTT TCGGGAATGTTTCCAGCCCTCCAAGGCTGCGCATCCTACGTGATGCCTATCACGCAACATCCTTCTAATAAAAATGCCGT TATAGTCGTTGATTTAAATAAAGATTTAAGCGGGTTAGCAACACTTTCGATAGAACAAATACAAACCTACTTATATACCC CCAGTATTGATTTACCGGAAGGCATTGAACGACCCGCCATAAAATTAATCCATATTAATAAATGTCCTATTATTGCACCG GCAAAAACATTAACCGAGGAACGTGCCGATCAATTGGGGATTGATCGAAAACAATGTCGACGTTCATTAGATTTTTTAAG TAACCAGCCAGAACTTGCAGAAAAACTACAAAAGGTTTTTATACAGGAAACGCCGAGTACGGAAAATAAATCCGTGGAGG AGATGTTATATAGCGGAGGATTCTTGTCTGCGGCAGACAAAGCGCTAAGCGAAGAAGTTTGTAACAGCACTTGGCCAGCG TTAGGTAATAAAGAATTCAACTTTGAAGACGACCGATTAGGCATACTATTATGGCATTACAGGGCCAGAAATGCACCAGA TTCATTGGATGTAGCAGAGCAGGAGAAATGGGCAAGGCACCGCCAAAATTATTTATTAGAAAACAGTGAAGCCTATATTG AAAAACTTGAAGCGCTTGCACTTGAAAATCAGAGCAATCCGGAAAAAATAGAATTATTGAAGCAACTATATGATTATTTG AATTATTTAAACTATGAATAA
Upstream 100 bases:
>100_bases AAAGTAAGTTAAAACTGAGTGTAAAATTAGCAGACGGCAGCGCATAAAAAGTAACAGAATAAAACAAAATAAAAAAACAC TTTAAAAAACAAGGTTTTAA
Downstream 100 bases:
>100_bases GCAACTGTTAACCTTAAAATTAATTAAGATTTAATGAGTAAAACGAATTCATATTTTAATCACTAGAAAAGCAAGCTAAG ATTGTAATCAAACTTATTAT
Product: exodeoxyribonuclease I
Products: NA
Alternate protein names: Exonuclease I; DNA deoxyribophosphodiesterase; dRPase [H]
Number of amino acids: Translated: 486; Mature: 485
Protein sequence:
>486_residues MSNSAQETTQKNTGDQPTLYWHDYETFGLNPGTDRPAQFAGIRTDLDLNIISEPDEWYCRPPNDYLPNPEACLITGITPQ RALQKGMVESEFIALINQRFSQKNTCVVGYNNIRFDDEITRFTLYRNFRDPYQREWKNGCSRWDIIDLVRACYALRPEGI NWPVDENDAPSFRLELLTKENGLAHQQAHDAMSDVYATIAMAKLIKETHPKLYDYFFGLRKKNNVMAQLKLGSNTPVVHV SGMFPALQGCASYVMPITQHPSNKNAVIVVDLNKDLSGLATLSIEQIQTYLYTPSIDLPEGIERPAIKLIHINKCPIIAP AKTLTEERADQLGIDRKQCRRSLDFLSNQPELAEKLQKVFIQETPSTENKSVEEMLYSGGFLSAADKALSEEVCNSTWPA LGNKEFNFEDDRLGILLWHYRARNAPDSLDVAEQEKWARHRQNYLLENSEAYIEKLEALALENQSNPEKIELLKQLYDYL NYLNYE
Sequences:
>Translated_486_residues MSNSAQETTQKNTGDQPTLYWHDYETFGLNPGTDRPAQFAGIRTDLDLNIISEPDEWYCRPPNDYLPNPEACLITGITPQ RALQKGMVESEFIALINQRFSQKNTCVVGYNNIRFDDEITRFTLYRNFRDPYQREWKNGCSRWDIIDLVRACYALRPEGI NWPVDENDAPSFRLELLTKENGLAHQQAHDAMSDVYATIAMAKLIKETHPKLYDYFFGLRKKNNVMAQLKLGSNTPVVHV SGMFPALQGCASYVMPITQHPSNKNAVIVVDLNKDLSGLATLSIEQIQTYLYTPSIDLPEGIERPAIKLIHINKCPIIAP AKTLTEERADQLGIDRKQCRRSLDFLSNQPELAEKLQKVFIQETPSTENKSVEEMLYSGGFLSAADKALSEEVCNSTWPA LGNKEFNFEDDRLGILLWHYRARNAPDSLDVAEQEKWARHRQNYLLENSEAYIEKLEALALENQSNPEKIELLKQLYDYL NYLNYE >Mature_485_residues SNSAQETTQKNTGDQPTLYWHDYETFGLNPGTDRPAQFAGIRTDLDLNIISEPDEWYCRPPNDYLPNPEACLITGITPQR ALQKGMVESEFIALINQRFSQKNTCVVGYNNIRFDDEITRFTLYRNFRDPYQREWKNGCSRWDIIDLVRACYALRPEGIN WPVDENDAPSFRLELLTKENGLAHQQAHDAMSDVYATIAMAKLIKETHPKLYDYFFGLRKKNNVMAQLKLGSNTPVVHVS GMFPALQGCASYVMPITQHPSNKNAVIVVDLNKDLSGLATLSIEQIQTYLYTPSIDLPEGIERPAIKLIHINKCPIIAPA KTLTEERADQLGIDRKQCRRSLDFLSNQPELAEKLQKVFIQETPSTENKSVEEMLYSGGFLSAADKALSEEVCNSTWPAL GNKEFNFEDDRLGILLWHYRARNAPDSLDVAEQEKWARHRQNYLLENSEAYIEKLEALALENQSNPEKIELLKQLYDYLN YLNYE
Specific function: Also functions as a DNA deoxyribophosphodiesterase that release deoxyribose-phosphate moieties following the cleavage DNA at an apurinic/apyrimidinic (AP) site by either an AP endonuclease AP lyase [H]
COG id: COG2925
COG function: function code L; Exonuclease I
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788321, Length=465, Percent_Identity=49.6774193548387, Blast_Score=466, Evalue=1e-132,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013620 - InterPro: IPR013520 - InterPro: IPR012337 [H]
Pfam domain/function: PF00929 Exonuc_X-T; PF08411 Exonuc_X-T_C [H]
EC number: =3.1.11.1 [H]
Molecular weight: Translated: 55689; Mature: 55558
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNSAQETTQKNTGDQPTLYWHDYETFGLNPGTDRPAQFAGIRTDLDLNIISEPDEWYCR CCCCHHHHHHCCCCCCCEEEEECCEECCCCCCCCCCHHHCCCEECCEEEEECCCCCCEEC PPNDYLPNPEACLITGITPQRALQKGMVESEFIALINQRFSQKNTCVVGYNNIRFDDEIT CCCCCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEECCCEEECCHHH RFTLYRNFRDPYQREWKNGCSRWDIIDLVRACYALRPEGINWPVDENDAPSFRLELLTKE HHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECC NGLAHQQAHDAMSDVYATIAMAKLIKETHPKLYDYFFGLRKKNNVMAQLKLGSNTPVVHV CCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCEEEEEEECCCCCEEEE SGMFPALQGCASYVMPITQHPSNKNAVIVVDLNKDLSGLATLSIEQIQTYLYTPSIDLPE CCCCHHHHHHHHHHCHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCC GIERPAIKLIHINKCPIIAPAKTLTEERADQLGIDRKQCRRSLDFLSNQPELAEKLQKVF CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHH IQETPSTENKSVEEMLYSGGFLSAADKALSEEVCNSTWPALGNKEFNFEDDRLGILLWHY HHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEE RARNAPDSLDVAEQEKWARHRQNYLLENSEAYIEKLEALALENQSNPEKIELLKQLYDYL ECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH NYLNYE HHCCCC >Mature Secondary Structure SNSAQETTQKNTGDQPTLYWHDYETFGLNPGTDRPAQFAGIRTDLDLNIISEPDEWYCR CCCHHHHHHCCCCCCCEEEEECCEECCCCCCCCCCHHHCCCEECCEEEEECCCCCCEEC PPNDYLPNPEACLITGITPQRALQKGMVESEFIALINQRFSQKNTCVVGYNNIRFDDEIT CCCCCCCCCCEEEEECCCHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEECCCEEECCHHH RFTLYRNFRDPYQREWKNGCSRWDIIDLVRACYALRPEGINWPVDENDAPSFRLELLTKE HHHHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECC NGLAHQQAHDAMSDVYATIAMAKLIKETHPKLYDYFFGLRKKNNVMAQLKLGSNTPVVHV CCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCEEEEEEECCCCCEEEE SGMFPALQGCASYVMPITQHPSNKNAVIVVDLNKDLSGLATLSIEQIQTYLYTPSIDLPE CCCCHHHHHHHHHHCHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCC GIERPAIKLIHINKCPIIAPAKTLTEERADQLGIDRKQCRRSLDFLSNQPELAEKLQKVF CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHH IQETPSTENKSVEEMLYSGGFLSAADKALSEEVCNSTWPALGNKEFNFEDDRLGILLWHY HHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEE RARNAPDSLDVAEQEKWARHRQNYLLENSEAYIEKLEALALENQSNPEKIELLKQLYDYL ECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH NYLNYE HHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]