| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is 119946024
Identifier: 119946024
GI number: 119946024
Start: 2884465
End: 2886447
Strand: Reverse
Name: 119946024
Synonym: Ping_2368
Alternate gene names: NA
Gene position: 2886447-2884465 (Counterclockwise)
Preceding gene: 119946025
Following gene: 119946021
Centisome position: 63.3
GC content: 40.95
Gene sequence:
>1983_bases ATGAAAGAGTTCCTTAATCGTTTGGGTTTGTCGTTAATTATCCTAACCTATCTCAGTATGGTAAGCGCATTATATGAACA GATAAACCCATTCTTAATTTTCTTTGGTCTGCTCTGTAGCGGTTGGCGTATTGCTCACTTTTACGGGCGTGTGCCCCTGC TGGGCAGGTTATGGCTGAATTTTATTACGATTGCCAGTAGCTTAGTCACTGTCATCATCGTATACCCACTGGGTTTATTT AGCATTATGCTGCATCTGATTATGTTAGGTTTTAGCTTGAAATTTTTGGAACTGAAATCAATCCGTGATGTGCATTTTTT TGTTAATACGGGTTTTGTGTTAGTCGCACTGTTCTTTATCTTTAATTACTCGATAGCGATGACGCTGGTGGCTGGTTTAT TGATTCTGTTATTATTAGCCGTACTGTTAAGTGTGCATGGGGGGCATTTAGCCGGCAATCGCTTTATTAAATTATTGTTG AAAAGTTGCTTGCTCAGTTTACCACTGGCACTGGTCCTCTTTGTTGTTATTCCGCGTTTACCCTCATTGTGGAAGATGCC GTTACAAAAATACGCTACCACGGGGTTAAGTGATACTGTCAGCCCCGGACAAATAGCTGAATTAAGCAGGTCCAGTGCTT TGGCTTTTCGTGCTTCATTTGTTGGGGAGCCGGTACGTCAAAGCGAGCGTTATTGGCGAGTGATGACCCTTGATAATTTT GACGGACAAACTTGGTCACAAAGCCTAAGTAAAAAAAATCAGGAGCAACAGGCTAAAACAGGGTCAAGTGTCAGCTTTCA ATTAAGCACCAAGAAAAATAGCATTGACTTGATCATTGAGCCGCACTACAACTATTGGATCCCCACGCTTGATTATGGCA AGGCTGATCTCGGTCAGGTTAGTTTAAGTGACTATGCCTTGCGCAGTACAAAACCTGTGGTAAAAAGGGATCACTTTGAG GTTGATTTATATCAACAGATAGAAACAAAACCATTAACAACAGTAGAAAAGCAACAACTACTCAGCCTGCCGACACAAGG TAATCTAGAAACACAAGACTGGGTTGCCACTAAGGTCAAGCAAGGGCTTGATAAACAAGCTATTCTTAAGCAACTGCTTA ATGATTTTTCAACAAAAAACTTCCGCTATACGCTCAAACCACCCCCGCTTGGGATCGACCAGGTGGATGATTTTCTATTC TCAACACAAGCCGGATTTTGTGTGCATTATGCCAGTAGCTATCTTTATGTGGCACGGCTTTTAGGTGTTCCTGCACGCAT GGTGACAGGATATTTGGGGGGCGAGTGGCAAGCTCAGGATCAGTTTATGTCTATTCGTCAATATGATGCACATGCCTGGG TTGAAATTTGGCAAGAGAACAAGTGGCTTAGGATTGATCCAACCGCTTATGTTGCCCCGGAGCGTGTTGAATTAGGGTTA GAGCAAAGTTTATCAAACCGTGACGAGTTTTTAGCCGATGAGTATTTCTCTCTGCAGAAATGGCGAAATATAAGGCTGTT AAACAAATTGCGCACAAAAATCGCGCAGATAGATTATTTATGGGCAACCTGGGTCATCAATTATGATAATAAAAAACAGC TGCGTTTGCTGCAGTCCTGGTTTGTCAACGTGCCCTGGTTGAATTTGTTTTCCGCCGTATTAATGATCATGTTATTAGTG TTTTCAAGTGTTTTTTTAATAATATTTAAACCTTGGATTAGACAAAAAATCAATGCAGAAGATAAGCTTTATATAAAACT GCAACGCTATTATTCAAAAAAGGGATTGCGCAGGCTTAAAGGGCAAACTGTCACGGATTTCTGCCAACTGGCCAGCACTA AATCTTCACATCCCTCTGCTCTGTTTGAAAGTTTTTCTTCGAAATACAATAGCTTAAAATATGACGTTAATTTATCAGCA AGTGAGCGTAAAAAACGCCTGAAACAGTTACGTTTTATCTGCAAACAATTACAGAAAGGATGA
Upstream 100 bases:
>100_bases GTGATTGCAGTTATGCTTTAAAACTGGGTCGTAAAACGATTGCTGCAGGTCATGGTTTACAGCATAAAAAAATGTGCTTA AAAGCATTAGCATTATACGT
Downstream 100 bases:
>100_bases AAGGTGACGCAGGCTTACCGTTGATGAGTCAATGACTTCGGTATCCTGTCTCAGGGCTTTCAGGTTGTTTTCGTAGCAGA ATACATAATTTAATGACGAA
Product: transglutaminase domain-containing protein
Products: NA
Alternate protein names: Transglutaminase Domain-Containing Protein; Transglutaminase Family Protein; Transglutaminase-Like; Transglutaminase-Like Superfamily Protein; Transglutaminase-Like Protein; Transglutaminase-Like Cysteine Protease; Transglutaminase-Like Domain-Containing Protein; Cysteine Protease; Protease; Membrane-Bound Protease; Protease Transglutaminase Motif; Transglutaminase/Protease-Like Protein; Transglutaminase-Like S Cysteine Proteases; Transglutaminase-Like Superfamily Domain-Containing Protein; Transmembrane Protein; Transglutaminase/Protease-Like Domain Membrane Lipoprotein; Protease Transglutaminase Superfamily; Transglutaminase Protein; Transmembrane Transglutaminase; Transglutaminase-Like Domain Protein; Transglutaminase-Like Cysteine Protease
Number of amino acids: Translated: 660; Mature: 660
Protein sequence:
>660_residues MKEFLNRLGLSLIILTYLSMVSALYEQINPFLIFFGLLCSGWRIAHFYGRVPLLGRLWLNFITIASSLVTVIIVYPLGLF SIMLHLIMLGFSLKFLELKSIRDVHFFVNTGFVLVALFFIFNYSIAMTLVAGLLILLLLAVLLSVHGGHLAGNRFIKLLL KSCLLSLPLALVLFVVIPRLPSLWKMPLQKYATTGLSDTVSPGQIAELSRSSALAFRASFVGEPVRQSERYWRVMTLDNF DGQTWSQSLSKKNQEQQAKTGSSVSFQLSTKKNSIDLIIEPHYNYWIPTLDYGKADLGQVSLSDYALRSTKPVVKRDHFE VDLYQQIETKPLTTVEKQQLLSLPTQGNLETQDWVATKVKQGLDKQAILKQLLNDFSTKNFRYTLKPPPLGIDQVDDFLF STQAGFCVHYASSYLYVARLLGVPARMVTGYLGGEWQAQDQFMSIRQYDAHAWVEIWQENKWLRIDPTAYVAPERVELGL EQSLSNRDEFLADEYFSLQKWRNIRLLNKLRTKIAQIDYLWATWVINYDNKKQLRLLQSWFVNVPWLNLFSAVLMIMLLV FSSVFLIIFKPWIRQKINAEDKLYIKLQRYYSKKGLRRLKGQTVTDFCQLASTKSSHPSALFESFSSKYNSLKYDVNLSA SERKKRLKQLRFICKQLQKG
Sequences:
>Translated_660_residues MKEFLNRLGLSLIILTYLSMVSALYEQINPFLIFFGLLCSGWRIAHFYGRVPLLGRLWLNFITIASSLVTVIIVYPLGLF SIMLHLIMLGFSLKFLELKSIRDVHFFVNTGFVLVALFFIFNYSIAMTLVAGLLILLLLAVLLSVHGGHLAGNRFIKLLL KSCLLSLPLALVLFVVIPRLPSLWKMPLQKYATTGLSDTVSPGQIAELSRSSALAFRASFVGEPVRQSERYWRVMTLDNF DGQTWSQSLSKKNQEQQAKTGSSVSFQLSTKKNSIDLIIEPHYNYWIPTLDYGKADLGQVSLSDYALRSTKPVVKRDHFE VDLYQQIETKPLTTVEKQQLLSLPTQGNLETQDWVATKVKQGLDKQAILKQLLNDFSTKNFRYTLKPPPLGIDQVDDFLF STQAGFCVHYASSYLYVARLLGVPARMVTGYLGGEWQAQDQFMSIRQYDAHAWVEIWQENKWLRIDPTAYVAPERVELGL EQSLSNRDEFLADEYFSLQKWRNIRLLNKLRTKIAQIDYLWATWVINYDNKKQLRLLQSWFVNVPWLNLFSAVLMIMLLV FSSVFLIIFKPWIRQKINAEDKLYIKLQRYYSKKGLRRLKGQTVTDFCQLASTKSSHPSALFESFSSKYNSLKYDVNLSA SERKKRLKQLRFICKQLQKG >Mature_660_residues MKEFLNRLGLSLIILTYLSMVSALYEQINPFLIFFGLLCSGWRIAHFYGRVPLLGRLWLNFITIASSLVTVIIVYPLGLF SIMLHLIMLGFSLKFLELKSIRDVHFFVNTGFVLVALFFIFNYSIAMTLVAGLLILLLLAVLLSVHGGHLAGNRFIKLLL KSCLLSLPLALVLFVVIPRLPSLWKMPLQKYATTGLSDTVSPGQIAELSRSSALAFRASFVGEPVRQSERYWRVMTLDNF DGQTWSQSLSKKNQEQQAKTGSSVSFQLSTKKNSIDLIIEPHYNYWIPTLDYGKADLGQVSLSDYALRSTKPVVKRDHFE VDLYQQIETKPLTTVEKQQLLSLPTQGNLETQDWVATKVKQGLDKQAILKQLLNDFSTKNFRYTLKPPPLGIDQVDDFLF STQAGFCVHYASSYLYVARLLGVPARMVTGYLGGEWQAQDQFMSIRQYDAHAWVEIWQENKWLRIDPTAYVAPERVELGL EQSLSNRDEFLADEYFSLQKWRNIRLLNKLRTKIAQIDYLWATWVINYDNKKQLRLLQSWFVNVPWLNLFSAVLMIMLLV FSSVFLIIFKPWIRQKINAEDKLYIKLQRYYSKKGLRRLKGQTVTDFCQLASTKSSHPSALFESFSSKYNSLKYDVNLSA SERKKRLKQLRFICKQLQKG
Specific function: Unknown
COG id: COG1305
COG function: function code E; Transglutaminase-like enzymes, putative cysteine proteases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 76024; Mature: 76024
Theoretical pI: Translated: 10.11; Mature: 10.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKEFLNRLGLSLIILTYLSMVSALYEQINPFLIFFGLLCSGWRIAHFYGRVPLLGRLWLN CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHH FITIASSLVTVIIVYPLGLFSIMLHLIMLGFSLKFLELKSIRDVHFFVNTGFVLVALFFI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH FNYSIAMTLVAGLLILLLLAVLLSVHGGHLAGNRFIKLLLKSCLLSLPLALVLFVVIPRL HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PSLWKMPLQKYATTGLSDTVSPGQIAELSRSSALAFRASFVGEPVRQSERYWRVMTLDNF CHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCEEEEEEEECC DGQTWSQSLSKKNQEQQAKTGSSVSFQLSTKKNSIDLIIEPHYNYWIPTLDYGKADLGQV CCCHHHHHHHHCCHHHHHHCCCCEEEEEECCCCCEEEEEECCCCEECCCCCCCCCCCCCC SLSDYALRSTKPVVKRDHFEVDLYQQIETKPLTTVEKQQLLSLPTQGNLETQDWVATKVK CHHHHHHHCCCCCHHCCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHH QGLDKQAILKQLLNDFSTKNFRYTLKPPPLGIDQVDDFLFSTQAGFCVHYASSYLYVARL HCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH LGVPARMVTGYLGGEWQAQDQFMSIRQYDAHAWVEIWQENKWLRIDPTAYVAPERVELGL HCCCHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCEEEECCCCEECCHHHHHCH EQSLSNRDEFLADEYFSLQKWRNIRLLNKLRTKIAQIDYLWATWVINYDNKKQLRLLQSW HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCHHHHHHHHHH FVNVPWLNLFSAVLMIMLLVFSSVFLIIFKPWIRQKINAEDKLYIKLQRYYSKKGLRRLK HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHC GQTVTDFCQLASTKSSHPSALFESFSSKYNSLKYDVNLSASERKKRLKQLRFICKQLQKG CCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKEFLNRLGLSLIILTYLSMVSALYEQINPFLIFFGLLCSGWRIAHFYGRVPLLGRLWLN CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHH FITIASSLVTVIIVYPLGLFSIMLHLIMLGFSLKFLELKSIRDVHFFVNTGFVLVALFFI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH FNYSIAMTLVAGLLILLLLAVLLSVHGGHLAGNRFIKLLLKSCLLSLPLALVLFVVIPRL HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PSLWKMPLQKYATTGLSDTVSPGQIAELSRSSALAFRASFVGEPVRQSERYWRVMTLDNF CHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCEEEEEEEECC DGQTWSQSLSKKNQEQQAKTGSSVSFQLSTKKNSIDLIIEPHYNYWIPTLDYGKADLGQV CCCHHHHHHHHCCHHHHHHCCCCEEEEEECCCCCEEEEEECCCCEECCCCCCCCCCCCCC SLSDYALRSTKPVVKRDHFEVDLYQQIETKPLTTVEKQQLLSLPTQGNLETQDWVATKVK CHHHHHHHCCCCCHHCCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHH QGLDKQAILKQLLNDFSTKNFRYTLKPPPLGIDQVDDFLFSTQAGFCVHYASSYLYVARL HCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH LGVPARMVTGYLGGEWQAQDQFMSIRQYDAHAWVEIWQENKWLRIDPTAYVAPERVELGL HCCCHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCEEEECCCCEECCHHHHHCH EQSLSNRDEFLADEYFSLQKWRNIRLLNKLRTKIAQIDYLWATWVINYDNKKQLRLLQSW HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCHHHHHHHHHH FVNVPWLNLFSAVLMIMLLVFSSVFLIIFKPWIRQKINAEDKLYIKLQRYYSKKGLRRLK HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHC GQTVTDFCQLASTKSSHPSALFESFSSKYNSLKYDVNLSASERKKRLKQLRFICKQLQKG CCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA