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The map label for this gene is glgB [H]

Identifier: 119946020

GI number: 119946020

Start: 2876629

End: 2878944

Strand: Reverse

Name: glgB [H]

Synonym: Ping_2364

Alternate gene names: 119946020

Gene position: 2878944-2876629 (Counterclockwise)

Preceding gene: 119946021

Following gene: 119946019

Centisome position: 63.14

GC content: 40.63

Gene sequence:

>2316_bases
ATGAATAAAACAGTAACTAAAGCGGCAAAAAAAACAGCTAAGCCGGTAAAAAATGCGGCTAAAAAAGCCGCGGTTAAAGT
CGCGAAAAAAAAGGAAGCGGTACCTAATGTCCATGCTTCTTTAATTTCATTACTGAACGAAGCGAAATTAGCTAATCCTT
TTGAGCAGTTGGGTTTATTGAAAAACCCGAAAGGCAAGGGGTTTGTGATCCGCGCCTGGTTACCCGATGCTCAAAAAGTA
GAGCTGTATGCTTTATCAGAAGAAAAGCCATTAACTGAGCTGAAGTTAATAGATGAAGCGGGTTTATTTGAAATTGAATT
ACCAGAACTGAATGAAAAATTCATTTATGAATTTAATGCCATTTACTCTACTGGAGAGCATCGTTTTGTCGATCCTTATC
AATTCCATGATATCGCTTTTGATGGTTTGTCTACCTTGCATGAAGCCCCGCAAAATGTTTATAAAACATTAGGCGCACAA
CTTAAAACAACTTATGTGGGTGACGTAGCTATCTCCGGCGTACGTTTTATTGTCTATGCTCCGAATGCCACCAGTGTTAG
CCTTATCACTCAATTCAATCATTGGGATGGACGACGTCAGCCAATGCAGCGCAGCTGGTGTGGACATTGGGTTATTTTTG
TACCGGATTTAAAAGCGGGCTGTGCTTATAAATTTGAACTCAAAGATGGATTGGGTAATCGTCTACCGCATAAAGCGGAT
CCTGTCGGTTTTCAAGCTGAGCTATACCCGTCTCATTCGTCGGTTGTTGTTGATCATGATCTTTACCAATGGAACGATCA
GGAGTGGCGCGCATCACAAACGGGTGATAAACGTTATAGCGCAATGAGTATCTATGAAGTGCATTTAGGTTCATGGAAGC
GTAAGCACGAAAATGGTGTAGATCGTATGCTTACCTATCGTGAACTGGCTGCTGAACTCATTCCTTATCTGCTTGAATTG
GGCTATACACACCTTGAAGTTATGCCCATTTCTGAATTTCCATTTGATGGTTCGTGGGGGTATCAACCCGTAGGTCTATT
TGCGGCAACGAGCCGCTTTGGTAATGCGGATGATCTTAAATATTTTATTGACCAATGTCACCAGGCTGGCATTTCTGTCA
TTGTTGATTGGGTACCTGCACATTTCCCCGCAGATCCGCACGGTTTAGCGCGATTTGATGGCACACCTTTATATGAGTAT
GAAGATCCGCGTCGTGGTTGGCATTTAGACTGGAACTCATACATTTATGATTTTGGTCGTGATAATGTACGTCAGTTTTT
GGTTGCAAGTGCTTTAATCTGGTTAGATAAATTCCATGTAGATGGTTTACGTGTTGATGCTGTGGCTTCAATGCTGCATT
GGGACTATTCACGTGAAGAAGGCGAATGGGTACCTAATGTTGATGGTGGTAACCATAACTATGAAGCTATTAGCTTATTA
AAATGGTTTAATGAAGAAGTATACGGTCAATATCCAAATGCAATGACTATTGCAGAGGAATCAACGGCCTTTGCGGGTGT
GTCTAAGCCTACTTTTGAGGGGGGGTTAGGCTTTGGTTTTAAATGGAATATGGGGTGGATGAACGATACGTTAAGCTACA
TGGAAACAGATCCTATGTATCGTAAATACCACCATCATGAAATGACCTTTGCGATGGTGTACCACTACAACGAACACTTT
ATTTTACCTATTTCTCATGATGAAGTAGTGCACGGCAAAAAAAGTATGATTGGTAAAATGCCGGGTGATGAATGGCAAGA
AGCTGCCAATTTACGTGCTTATATGGGTTATATGTATGCGCATCCGGGCAAAAAGTTAAACTTTATGGGCACTGAATTTG
CGCAAACGAGCGAATGGAATCATAACAAGCAATTAGATTGGGGCTTACTGAAATTTGATAAACATAAAGGTCAAAAACTG
CTCACCTGTGACCTGAATAAAGCTTATAAAAACAACGCTGCATTTTATGAAGCTGACTATGATACCAAAGGGTTTGAATG
GTTAGATCATTCGGATGGGGAAAAAAGTATTCTTGCTTTTGTAAGGAAAAACTTAGCGCAAGATAAGAAAGTTATCTGCC
TGTCTAACTTTACCCCGTTACCCCGCGATGGCTACCGGGTGGCCGTTGATGAATTAGCTGATTATGAAGTTATTTTAAAC
ACTGATAGTGAATATTATTGGGGCAGTAATTATGCAATGGGCGATAAAATGGGCGTCTTTGTTGCAGAAGAACAACAGTG
GCAAGGCAAGGAATATTCAATTAAACTGAATTTACCCCCTTTATCTACTGTGTATTTACAAAAAAAGGTAAAATAA

Upstream 100 bases:

>100_bases
TTACCGATCCAGATATAAAAACACTGCTCAATAAATTATCTCAAGCGCGCAACGGTCAAATATAATTGATATATAACATT
AACCAGTAGGCTCTTAAATT

Downstream 100 bases:

>100_bases
TTGGAAGATAAACTATTAGAACTGGATAAAAAGATGCATCCTTTCTCTGCATCTCGCGGGCAGTTTCTGCCCCTTGGTGC
AATTCTAGACCAAGGAGGCT

Product: glycogen branching enzyme

Products: NA

Alternate protein names: 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase; Glycogen-branching enzyme; BE [H]

Number of amino acids: Translated: 771; Mature: 771

Protein sequence:

>771_residues
MNKTVTKAAKKTAKPVKNAAKKAAVKVAKKKEAVPNVHASLISLLNEAKLANPFEQLGLLKNPKGKGFVIRAWLPDAQKV
ELYALSEEKPLTELKLIDEAGLFEIELPELNEKFIYEFNAIYSTGEHRFVDPYQFHDIAFDGLSTLHEAPQNVYKTLGAQ
LKTTYVGDVAISGVRFIVYAPNATSVSLITQFNHWDGRRQPMQRSWCGHWVIFVPDLKAGCAYKFELKDGLGNRLPHKAD
PVGFQAELYPSHSSVVVDHDLYQWNDQEWRASQTGDKRYSAMSIYEVHLGSWKRKHENGVDRMLTYRELAAELIPYLLEL
GYTHLEVMPISEFPFDGSWGYQPVGLFAATSRFGNADDLKYFIDQCHQAGISVIVDWVPAHFPADPHGLARFDGTPLYEY
EDPRRGWHLDWNSYIYDFGRDNVRQFLVASALIWLDKFHVDGLRVDAVASMLHWDYSREEGEWVPNVDGGNHNYEAISLL
KWFNEEVYGQYPNAMTIAEESTAFAGVSKPTFEGGLGFGFKWNMGWMNDTLSYMETDPMYRKYHHHEMTFAMVYHYNEHF
ILPISHDEVVHGKKSMIGKMPGDEWQEAANLRAYMGYMYAHPGKKLNFMGTEFAQTSEWNHNKQLDWGLLKFDKHKGQKL
LTCDLNKAYKNNAAFYEADYDTKGFEWLDHSDGEKSILAFVRKNLAQDKKVICLSNFTPLPRDGYRVAVDELADYEVILN
TDSEYYWGSNYAMGDKMGVFVAEEQQWQGKEYSIKLNLPPLSTVYLQKKVK

Sequences:

>Translated_771_residues
MNKTVTKAAKKTAKPVKNAAKKAAVKVAKKKEAVPNVHASLISLLNEAKLANPFEQLGLLKNPKGKGFVIRAWLPDAQKV
ELYALSEEKPLTELKLIDEAGLFEIELPELNEKFIYEFNAIYSTGEHRFVDPYQFHDIAFDGLSTLHEAPQNVYKTLGAQ
LKTTYVGDVAISGVRFIVYAPNATSVSLITQFNHWDGRRQPMQRSWCGHWVIFVPDLKAGCAYKFELKDGLGNRLPHKAD
PVGFQAELYPSHSSVVVDHDLYQWNDQEWRASQTGDKRYSAMSIYEVHLGSWKRKHENGVDRMLTYRELAAELIPYLLEL
GYTHLEVMPISEFPFDGSWGYQPVGLFAATSRFGNADDLKYFIDQCHQAGISVIVDWVPAHFPADPHGLARFDGTPLYEY
EDPRRGWHLDWNSYIYDFGRDNVRQFLVASALIWLDKFHVDGLRVDAVASMLHWDYSREEGEWVPNVDGGNHNYEAISLL
KWFNEEVYGQYPNAMTIAEESTAFAGVSKPTFEGGLGFGFKWNMGWMNDTLSYMETDPMYRKYHHHEMTFAMVYHYNEHF
ILPISHDEVVHGKKSMIGKMPGDEWQEAANLRAYMGYMYAHPGKKLNFMGTEFAQTSEWNHNKQLDWGLLKFDKHKGQKL
LTCDLNKAYKNNAAFYEADYDTKGFEWLDHSDGEKSILAFVRKNLAQDKKVICLSNFTPLPRDGYRVAVDELADYEVILN
TDSEYYWGSNYAMGDKMGVFVAEEQQWQGKEYSIKLNLPPLSTVYLQKKVK
>Mature_771_residues
MNKTVTKAAKKTAKPVKNAAKKAAVKVAKKKEAVPNVHASLISLLNEAKLANPFEQLGLLKNPKGKGFVIRAWLPDAQKV
ELYALSEEKPLTELKLIDEAGLFEIELPELNEKFIYEFNAIYSTGEHRFVDPYQFHDIAFDGLSTLHEAPQNVYKTLGAQ
LKTTYVGDVAISGVRFIVYAPNATSVSLITQFNHWDGRRQPMQRSWCGHWVIFVPDLKAGCAYKFELKDGLGNRLPHKAD
PVGFQAELYPSHSSVVVDHDLYQWNDQEWRASQTGDKRYSAMSIYEVHLGSWKRKHENGVDRMLTYRELAAELIPYLLEL
GYTHLEVMPISEFPFDGSWGYQPVGLFAATSRFGNADDLKYFIDQCHQAGISVIVDWVPAHFPADPHGLARFDGTPLYEY
EDPRRGWHLDWNSYIYDFGRDNVRQFLVASALIWLDKFHVDGLRVDAVASMLHWDYSREEGEWVPNVDGGNHNYEAISLL
KWFNEEVYGQYPNAMTIAEESTAFAGVSKPTFEGGLGFGFKWNMGWMNDTLSYMETDPMYRKYHHHEMTFAMVYHYNEHF
ILPISHDEVVHGKKSMIGKMPGDEWQEAANLRAYMGYMYAHPGKKLNFMGTEFAQTSEWNHNKQLDWGLLKFDKHKGQKL
LTCDLNKAYKNNAAFYEADYDTKGFEWLDHSDGEKSILAFVRKNLAQDKKVICLSNFTPLPRDGYRVAVDELADYEVILN
TDSEYYWGSNYAMGDKMGVFVAEEQQWQGKEYSIKLNLPPLSTVYLQKKVK

Specific function: Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position [H]

COG id: COG0296

COG function: function code G; 1,4-alpha-glucan branching enzyme

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family [H]

Homologues:

Organism=Homo sapiens, GI189458812, Length=672, Percent_Identity=24.8511904761905, Blast_Score=140, Evalue=6e-33,
Organism=Escherichia coli, GI1789839, Length=740, Percent_Identity=46.6216216216216, Blast_Score=667, Evalue=0.0,
Organism=Escherichia coli, GI2367229, Length=339, Percent_Identity=27.1386430678466, Blast_Score=65, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17554896, Length=634, Percent_Identity=23.9747634069401, Blast_Score=155, Evalue=7e-38,
Organism=Caenorhabditis elegans, GI32564391, Length=551, Percent_Identity=24.1379310344828, Blast_Score=143, Evalue=3e-34,
Organism=Saccharomyces cerevisiae, GI6320826, Length=686, Percent_Identity=25.2186588921283, Blast_Score=143, Evalue=8e-35,
Organism=Drosophila melanogaster, GI28573410, Length=609, Percent_Identity=26.2725779967159, Blast_Score=153, Evalue=5e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006407
- InterPro:   IPR006048
- InterPro:   IPR013780
- InterPro:   IPR006047
- InterPro:   IPR004193
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR013783
- InterPro:   IPR014756 [H]

Pfam domain/function: PF00128 Alpha-amylase; PF02806 Alpha-amylase_C; PF02922 CBM_48 [H]

EC number: =2.4.1.18 [H]

Molecular weight: Translated: 88457; Mature: 88457

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKTVTKAAKKTAKPVKNAAKKAAVKVAKKKEAVPNVHASLISLLNEAKLANPFEQLGLL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHCCCC
KNPKGKGFVIRAWLPDAQKVELYALSEEKPLTELKLIDEAGLFEIELPELNEKFIYEFNA
CCCCCCEEEEEEECCCCCEEEEEEECCCCCCHHEEEECCCCEEEEECCCCCCCCEEEEEH
IYSTGEHRFVDPYQFHDIAFDGLSTLHEAPQNVYKTLGAQLKTTYVGDVAISGVRFIVYA
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEEECCEEEEEEC
PNATSVSLITQFNHWDGRRQPMQRSWCGHWVIFVPDLKAGCAYKFELKDGLGNRLPHKAD
CCCCEEEEEEEECCCCCCCCCHHHHCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCC
PVGFQAELYPSHSSVVVDHDLYQWNDQEWRASQTGDKRYSAMSIYEVHLGSWKRKHENGV
CCCEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCHHHHHHCCH
DRMLTYRELAAELIPYLLELGYTHLEVMPISEFPFDGSWGYQPVGLFAATSRFGNADDLK
HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEHEEECCCCCCHHHHH
YFIDQCHQAGISVIVDWVPAHFPADPHGLARFDGTPLYEYEDPRRGWHLDWNSYIYDFGR
HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHEECCCH
DNVRQFLVASALIWLDKFHVDGLRVDAVASMLHWDYSREEGEWVPNVDGGNHNYEAISLL
HHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHH
KWFNEEVYGQYPNAMTIAEESTAFAGVSKPTFEGGLGFGFKWNMGWMNDTLSYMETDPMY
HHHCHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHCCHHH
RKYHHHEMTFAMVYHYNEHFILPISHDEVVHGKKSMIGKMPGDEWQEAANLRAYMGYMYA
HHHHCCCEEEEEEEEECCEEEEEECCCHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHHC
HPGKKLNFMGTEFAQTSEWNHNKQLDWGLLKFDKHKGQKLLTCDLNKAYKNNAAFYEADY
CCCCEEEECCCCHHHCCCCCCCCCCCCCCEEECCCCCCEEEEEECCHHHCCCCEEEECCC
DTKGFEWLDHSDGEKSILAFVRKNLAQDKKVICLSNFTPLPRDGYRVAVDELADYEVILN
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEECCCCCEEEEEE
TDSEYYWGSNYAMGDKMGVFVAEEQQWQGKEYSIKLNLPPLSTVYLQKKVK
CCCCEEECCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCEEHHEECCC
>Mature Secondary Structure
MNKTVTKAAKKTAKPVKNAAKKAAVKVAKKKEAVPNVHASLISLLNEAKLANPFEQLGLL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHCCCC
KNPKGKGFVIRAWLPDAQKVELYALSEEKPLTELKLIDEAGLFEIELPELNEKFIYEFNA
CCCCCCEEEEEEECCCCCEEEEEEECCCCCCHHEEEECCCCEEEEECCCCCCCCEEEEEH
IYSTGEHRFVDPYQFHDIAFDGLSTLHEAPQNVYKTLGAQLKTTYVGDVAISGVRFIVYA
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEEECCEEEEEEC
PNATSVSLITQFNHWDGRRQPMQRSWCGHWVIFVPDLKAGCAYKFELKDGLGNRLPHKAD
CCCCEEEEEEEECCCCCCCCCHHHHCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCC
PVGFQAELYPSHSSVVVDHDLYQWNDQEWRASQTGDKRYSAMSIYEVHLGSWKRKHENGV
CCCEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCHHHHHHCCH
DRMLTYRELAAELIPYLLELGYTHLEVMPISEFPFDGSWGYQPVGLFAATSRFGNADDLK
HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEHEEECCCCCCHHHHH
YFIDQCHQAGISVIVDWVPAHFPADPHGLARFDGTPLYEYEDPRRGWHLDWNSYIYDFGR
HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHEECCCH
DNVRQFLVASALIWLDKFHVDGLRVDAVASMLHWDYSREEGEWVPNVDGGNHNYEAISLL
HHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHH
KWFNEEVYGQYPNAMTIAEESTAFAGVSKPTFEGGLGFGFKWNMGWMNDTLSYMETDPMY
HHHCHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHCCHHH
RKYHHHEMTFAMVYHYNEHFILPISHDEVVHGKKSMIGKMPGDEWQEAANLRAYMGYMYA
HHHHCCCEEEEEEEEECCEEEEEECCCHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHHC
HPGKKLNFMGTEFAQTSEWNHNKQLDWGLLKFDKHKGQKLLTCDLNKAYKNNAAFYEADY
CCCCEEEECCCCHHHCCCCCCCCCCCCCCEEECCCCCCEEEEEECCHHHCCCCEEEECCC
DTKGFEWLDHSDGEKSILAFVRKNLAQDKKVICLSNFTPLPRDGYRVAVDELADYEVILN
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEECCCCCEEEEEE
TDSEYYWGSNYAMGDKMGVFVAEEQQWQGKEYSIKLNLPPLSTVYLQKKVK
CCCCEEECCCCCCCCCCEEEEECCCCCCCCEEEEEEECCCCCEEHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA