| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is 119945977
Identifier: 119945977
GI number: 119945977
Start: 2817086
End: 2818483
Strand: Reverse
Name: 119945977
Synonym: Ping_2317
Alternate gene names: NA
Gene position: 2818483-2817086 (Counterclockwise)
Preceding gene: 119945978
Following gene: 119945975
Centisome position: 61.81
GC content: 47.5
Gene sequence:
>1398_bases ATGAAAAATGTATTGTTAAAAACATGCTTAACCGGTTTGGCTTTGTCTGTCGCAGGTTTAGCTAATGCGCAAGATGCAGG CGATCCGGTAAAAATCTTTACGCCACAGTTGATCTCCCACGCGGCAATATCGGGTGCTGCGTTAAGCATTTCAGCAGACT CGGTCGTAGACGGCGATCTCGCTGCAAAAGCGGCCATTGCTATCGGTGCCGGTAAGTCACAGACTCAAGAAATTTATGCA GGCGCGGCGGTTGCTACAGGGGCCCTGTCCAGGGTTAAACATATCTTTTCTGGCGCGGCCACTGCGATAGGGGCGGGTGC GCATGCTCAAAATATAGCCGCTGGCGCTGCTATCACTCTCGGTGCGGGTGCTGACGTTAATAAAATAGTTGCGAGAGCAG CCATTACCTTAGGCGCAGGAGCGACTAATGAGGGGATATTAACGGAAGAAATCATTGCGCAAAGCGCAGCGGATGGAAAG ATACGTAATTTTGACGACATGGTATTAGCAACAAAAGCCATAGAGCATGCACAGAGAGCCTTAACCACCCTGAACAGTTC GGTCACTTATCCAAAATCACTGTATACAACGATGGGATCAGACATATTAGCGCCCGGCATATACACTGGCAGTGCGCTGT CTATCGCTGCAAATTCAACCATCTACTTTGATGCGGGTCAGGGGGATGATAAGGATAAAAACCACGTTTGGGTGATTAAT CTTAGCGAGGCGCTGACGGTCGGTGCAGACACTCAATTTAAAATAGAAAATTTAGCTGAAGGGCATACCGCGAATGTTAT CTGGAATGTCGGCGCTGCAGTTACGCTTGGTGCGGGCACGCAGTTTTTAGGGACCACATTTGCAGGCGGCGCGTTTAACG CGGCAACCTCGAATGTGAGTTGCGGTAATATATATGCCGGCGGCGCCGTGAGTGTTGGCAGCATCGGTACTGTTGGGGAC GGCTCTAACGGCACCACAACAGGTGAGCCGGTCGCATGTAATACCAATGCGCAAAGCTCAGCTGATTTCACTATAGCTGA CAACGAATATTCTTTTGCAGCAAATTCACAGTGCTCTGTATGGACAAAGGAGATGATCCAACAGATTGGAGCCACATCTG CACAGATCTATCATTATTATGATTATAATTATGGAGTGGGCAAGAATGATTATTTTCACATAAAGTCGGACTACGGTTCC ATGATGACAAAGTCTTCGAACCTTCGTGGCGATGAGCTGAACATGATGTACATTTACAGGGGTACTATAGATGGGAAAAT ATATTATGGATTCTTCGACTCGCAGGAAGAGCTCCTTAATTGTGAAGCAACCTTGATAGCTGAGGCCAAACGCCGCGGTC TTAAGCCTTCATTCCATAGTAATTATTATTATTATTGA
Upstream 100 bases:
>100_bases TAGTGCCTATTTTGTTTTGTCCTAAAAATTTCCAGGGTGTTGTCGCTCAGGAATACAGATATCCCATAACGGGGTATCCC ACATAACATGAAAGTAGATA
Downstream 100 bases:
>100_bases TCAACCTTGCTAGGGTTAATTTTTCCTACGTAATGCAAGATCACATCTTTAAGACATTGGGTATAAGTAGCTAACCAGCA TAAAGGCCACTTCTTCGGAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 465; Mature: 465
Protein sequence:
>465_residues MKNVLLKTCLTGLALSVAGLANAQDAGDPVKIFTPQLISHAAISGAALSISADSVVDGDLAAKAAIAIGAGKSQTQEIYA GAAVATGALSRVKHIFSGAATAIGAGAHAQNIAAGAAITLGAGADVNKIVARAAITLGAGATNEGILTEEIIAQSAADGK IRNFDDMVLATKAIEHAQRALTTLNSSVTYPKSLYTTMGSDILAPGIYTGSALSIAANSTIYFDAGQGDDKDKNHVWVIN LSEALTVGADTQFKIENLAEGHTANVIWNVGAAVTLGAGTQFLGTTFAGGAFNAATSNVSCGNIYAGGAVSVGSIGTVGD GSNGTTTGEPVACNTNAQSSADFTIADNEYSFAANSQCSVWTKEMIQQIGATSAQIYHYYDYNYGVGKNDYFHIKSDYGS MMTKSSNLRGDELNMMYIYRGTIDGKIYYGFFDSQEELLNCEATLIAEAKRRGLKPSFHSNYYYY
Sequences:
>Translated_465_residues MKNVLLKTCLTGLALSVAGLANAQDAGDPVKIFTPQLISHAAISGAALSISADSVVDGDLAAKAAIAIGAGKSQTQEIYA GAAVATGALSRVKHIFSGAATAIGAGAHAQNIAAGAAITLGAGADVNKIVARAAITLGAGATNEGILTEEIIAQSAADGK IRNFDDMVLATKAIEHAQRALTTLNSSVTYPKSLYTTMGSDILAPGIYTGSALSIAANSTIYFDAGQGDDKDKNHVWVIN LSEALTVGADTQFKIENLAEGHTANVIWNVGAAVTLGAGTQFLGTTFAGGAFNAATSNVSCGNIYAGGAVSVGSIGTVGD GSNGTTTGEPVACNTNAQSSADFTIADNEYSFAANSQCSVWTKEMIQQIGATSAQIYHYYDYNYGVGKNDYFHIKSDYGS MMTKSSNLRGDELNMMYIYRGTIDGKIYYGFFDSQEELLNCEATLIAEAKRRGLKPSFHSNYYYY >Mature_465_residues MKNVLLKTCLTGLALSVAGLANAQDAGDPVKIFTPQLISHAAISGAALSISADSVVDGDLAAKAAIAIGAGKSQTQEIYA GAAVATGALSRVKHIFSGAATAIGAGAHAQNIAAGAAITLGAGADVNKIVARAAITLGAGATNEGILTEEIIAQSAADGK IRNFDDMVLATKAIEHAQRALTTLNSSVTYPKSLYTTMGSDILAPGIYTGSALSIAANSTIYFDAGQGDDKDKNHVWVIN LSEALTVGADTQFKIENLAEGHTANVIWNVGAAVTLGAGTQFLGTTFAGGAFNAATSNVSCGNIYAGGAVSVGSIGTVGD GSNGTTTGEPVACNTNAQSSADFTIADNEYSFAANSQCSVWTKEMIQQIGATSAQIYHYYDYNYGVGKNDYFHIKSDYGS MMTKSSNLRGDELNMMYIYRGTIDGKIYYGFFDSQEELLNCEATLIAEAKRRGLKPSFHSNYYYY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48217; Mature: 48217
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNVLLKTCLTGLALSVAGLANAQDAGDPVKIFTPQLISHAAISGAALSISADSVVDGDL CCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHCCEEEEEECCCCCCCCH AAKAAIAIGAGKSQTQEIYAGAAVATGALSRVKHIFSGAATAIGAGAHAQNIAAGAAITL HHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCHHHHCCCCEEEE GAGADVNKIVARAAITLGAGATNEGILTEEIIAQSAADGKIRNFDDMVLATKAIEHAQRA CCCCCHHHHHHHHHHEECCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH LTTLNSSVTYPKSLYTTMGSDILAPGIYTGSALSIAANSTIYFDAGQGDDKDKNHVWVIN HHHHCCCCCCCHHHHHHCCCCHHCCCCCCCCEEEEEECCEEEEECCCCCCCCCCEEEEEE LSEALTVGADTQFKIENLAEGHTANVIWNVGAAVTLGAGTQFLGTTFAGGAFNAATSNVS EHHHEEECCCCEEEHHHHCCCCCEEEEEECCCEEEECCCCCCHHHCCCCCCCCCCCCCCC CGNIYAGGAVSVGSIGTVGDGSNGTTTGEPVACNTNAQSSADFTIADNEYSFAANSQCSV CCCEECCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEECCCEEECCCCCCHH WTKEMIQQIGATSAQIYHYYDYNYGVGKNDYFHIKSDYGSMMTKSSNLRGDELNMMYIYR HHHHHHHHHCCCCEEEEEEEECCCCCCCCCEEEEECCCCCHHCCCCCCCCCCEEEEEEEE GTIDGKIYYGFFDSQEELLNCEATLIAEAKRRGLKPSFHSNYYYY EEECCEEEEEEECCHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure MKNVLLKTCLTGLALSVAGLANAQDAGDPVKIFTPQLISHAAISGAALSISADSVVDGDL CCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHCCEEEEEECCCCCCCCH AAKAAIAIGAGKSQTQEIYAGAAVATGALSRVKHIFSGAATAIGAGAHAQNIAAGAAITL HHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCHHHHCCCCEEEE GAGADVNKIVARAAITLGAGATNEGILTEEIIAQSAADGKIRNFDDMVLATKAIEHAQRA CCCCCHHHHHHHHHHEECCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH LTTLNSSVTYPKSLYTTMGSDILAPGIYTGSALSIAANSTIYFDAGQGDDKDKNHVWVIN HHHHCCCCCCCHHHHHHCCCCHHCCCCCCCCEEEEEECCEEEEECCCCCCCCCCEEEEEE LSEALTVGADTQFKIENLAEGHTANVIWNVGAAVTLGAGTQFLGTTFAGGAFNAATSNVS EHHHEEECCCCEEEHHHHCCCCCEEEEEECCCEEEECCCCCCHHHCCCCCCCCCCCCCCC CGNIYAGGAVSVGSIGTVGDGSNGTTTGEPVACNTNAQSSADFTIADNEYSFAANSQCSV CCCEECCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEECCCEEECCCCCCHH WTKEMIQQIGATSAQIYHYYDYNYGVGKNDYFHIKSDYGSMMTKSSNLRGDELNMMYIYR HHHHHHHHHCCCCEEEEEEEECCCCCCCCCEEEEECCCCCHHCCCCCCCCCCEEEEEEEE GTIDGKIYYGFFDSQEELLNCEATLIAEAKRRGLKPSFHSNYYYY EEECCEEEEEEECCHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA