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The map label for this gene is yocR [H]

Identifier: 119945957

GI number: 119945957

Start: 2791474

End: 2792859

Strand: Reverse

Name: yocR [H]

Synonym: Ping_2297

Alternate gene names: 119945957

Gene position: 2792859-2791474 (Counterclockwise)

Preceding gene: 119945958

Following gene: 119945955

Centisome position: 61.25

GC content: 41.05

Gene sequence:

>1386_bases
ATGAATACTGATACTCATGTTTCCAATCGATGGTCAAGTCGATACGCGTATATCTTAGCTGCAACGGGTGCTGCAGTTGG
ACTGGGTAATATATGGAAATTTCCCTATATCATGGGTGAAAATGGCGGTGGCGCGTTTGTTTTTGTCTATCTTTTATGTA
TATTTCTGATCGGTGTCCCGGTCATGATGGCCGAAGTTGTTATTGGTAAACGTGGGCGTTCAACGCCTGCCAATGCTATG
ACTCATGTTGCAACCGAGTCGGGTCACTCATCTCATTGGTCGATTATTGGCTCAATTGGGGTGTTAGCGGGTTTCTTGAT
TTTAAGTTTTTATGCGGTTATTGCAGGTTGGGCAGCAGCTTACGTGTTTTTTGCCGGTGCCGGCGAATTTAGCGCGGCGG
CTGCGGATCCTGCTACTAATGCCGATGTAATAGGGGCTTTATTTACTGATTTGATTACCAGCGTACCCCAACTTCTTATC
TGGACAACCTTAACCATTGTCGCTGTTGTTTACGTGATCTCTAAAGGTGTCAAAGAGGGACTGGAAACGGCAATTACTTA
TTTAATGCCGACTTTATTTATATTACTTTTTGGTATTATGATTTACTCGGCCATTGTGGGTGATTTTGCTGCTGCCTTTA
CCTTTATGTTCCACATTGACTTTTCGCAACTGACGATTGAAGGGGCATTAGTGGCATTAGGTCATGCCTTTTTCACCCTT
AGTTTAGCGATGGGTATTATGATGATTTATGGCGCCTATTTACCTAAAGGCGTTTCAATTGTTAAAACCTCAATGATGAT
CGCTGTTGCTGATACTGTTGTTGCATTAATTGCGGGACTTGCTATTTACCCTATCGTGTTTGCGCATGGTTTGGAGCCAA
GTGCCGGACCCGGGTTATTGTTTCAATCACTTCCTCTTGCCTTTGGTTCAATGCCTTTTGGTGATTTTGTGGGGGTTTTA
TTCTTTGTGATGGTGGTTTTTGCTGCATTCACTTCTGCTATTGCACTGCTTGAATCTCCTACTGCTTATTTAGTAGAGCG
TCAAAATGTAAGTCGTACTAAAGCGGCTATTATTGCAGGTGCTGCAGTTTGGATATTGAGTTTATGTACTATCTACTCAT
TTGCCGGTGCGGAATGGACAAAACTGTCTTTTGGTATGGGTGGGGATATATTTGAGTTTTTAGATTACCTTACAGCCAAT
ATTTTATTGCCTCTGGGTGGCATATTAATATCAATCTTTGCCGGTTGGGTCATTAAACCAGAGATTTTAAAAGAAGAGTT
TAACTTATCTGATAAATATTTTGCTATTGTATTAACACTTCTACGTTATGTTGCTCCAATAGGTATTTTACTCGTATTTT
TAAATGCGATAGGTCTTTTTAAGTAA

Upstream 100 bases:

>100_bases
CTTCCTGTGTAACTATTATTATCCTTAAGCGGACGTTTGCTTAATTTATATTTTTATACGTTTTGGCTATAACTATTTTA
ATCACACCTCAAGGATTTAA

Downstream 100 bases:

>100_bases
TCTCTATGCAGACCACTCGACGCTATCTTCAAGTGTAAGCAATAGATAAAAACCGTTTGGGTAAAACCAAACGGTTTTTT
TTAACAAAAAAAAGCAGCTC

Product: Na+-dependent transporter of the SNF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 461; Mature: 461

Protein sequence:

>461_residues
MNTDTHVSNRWSSRYAYILAATGAAVGLGNIWKFPYIMGENGGGAFVFVYLLCIFLIGVPVMMAEVVIGKRGRSTPANAM
THVATESGHSSHWSIIGSIGVLAGFLILSFYAVIAGWAAAYVFFAGAGEFSAAAADPATNADVIGALFTDLITSVPQLLI
WTTLTIVAVVYVISKGVKEGLETAITYLMPTLFILLFGIMIYSAIVGDFAAAFTFMFHIDFSQLTIEGALVALGHAFFTL
SLAMGIMMIYGAYLPKGVSIVKTSMMIAVADTVVALIAGLAIYPIVFAHGLEPSAGPGLLFQSLPLAFGSMPFGDFVGVL
FFVMVVFAAFTSAIALLESPTAYLVERQNVSRTKAAIIAGAAVWILSLCTIYSFAGAEWTKLSFGMGGDIFEFLDYLTAN
ILLPLGGILISIFAGWVIKPEILKEEFNLSDKYFAIVLTLLRYVAPIGILLVFLNAIGLFK

Sequences:

>Translated_461_residues
MNTDTHVSNRWSSRYAYILAATGAAVGLGNIWKFPYIMGENGGGAFVFVYLLCIFLIGVPVMMAEVVIGKRGRSTPANAM
THVATESGHSSHWSIIGSIGVLAGFLILSFYAVIAGWAAAYVFFAGAGEFSAAAADPATNADVIGALFTDLITSVPQLLI
WTTLTIVAVVYVISKGVKEGLETAITYLMPTLFILLFGIMIYSAIVGDFAAAFTFMFHIDFSQLTIEGALVALGHAFFTL
SLAMGIMMIYGAYLPKGVSIVKTSMMIAVADTVVALIAGLAIYPIVFAHGLEPSAGPGLLFQSLPLAFGSMPFGDFVGVL
FFVMVVFAAFTSAIALLESPTAYLVERQNVSRTKAAIIAGAAVWILSLCTIYSFAGAEWTKLSFGMGGDIFEFLDYLTAN
ILLPLGGILISIFAGWVIKPEILKEEFNLSDKYFAIVLTLLRYVAPIGILLVFLNAIGLFK
>Mature_461_residues
MNTDTHVSNRWSSRYAYILAATGAAVGLGNIWKFPYIMGENGGGAFVFVYLLCIFLIGVPVMMAEVVIGKRGRSTPANAM
THVATESGHSSHWSIIGSIGVLAGFLILSFYAVIAGWAAAYVFFAGAGEFSAAAADPATNADVIGALFTDLITSVPQLLI
WTTLTIVAVVYVISKGVKEGLETAITYLMPTLFILLFGIMIYSAIVGDFAAAFTFMFHIDFSQLTIEGALVALGHAFFTL
SLAMGIMMIYGAYLPKGVSIVKTSMMIAVADTVVALIAGLAIYPIVFAHGLEPSAGPGLLFQSLPLAFGSMPFGDFVGVL
FFVMVVFAAFTSAIALLESPTAYLVERQNVSRTKAAIIAGAAVWILSLCTIYSFAGAEWTKLSFGMGGDIFEFLDYLTAN
ILLPLGGILISIFAGWVIKPEILKEEFNLSDKYFAIVLTLLRYVAPIGILLVFLNAIGLFK

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI188528618, Length=442, Percent_Identity=24.4343891402715, Blast_Score=103, Evalue=4e-22,
Organism=Homo sapiens, GI21361581, Length=394, Percent_Identity=23.0964467005076, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI289191351, Length=386, Percent_Identity=23.0569948186528, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI4557046, Length=386, Percent_Identity=23.0569948186528, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI289191377, Length=386, Percent_Identity=23.0569948186528, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI7657587, Length=381, Percent_Identity=22.5721784776903, Blast_Score=91, Evalue=3e-18,
Organism=Homo sapiens, GI4507043, Length=383, Percent_Identity=22.1932114882507, Blast_Score=90, Evalue=6e-18,
Organism=Homo sapiens, GI194018524, Length=305, Percent_Identity=26.8852459016393, Blast_Score=89, Evalue=7e-18,
Organism=Homo sapiens, GI197276623, Length=361, Percent_Identity=23.8227146814404, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI54607094, Length=361, Percent_Identity=23.8227146814404, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI171184408, Length=398, Percent_Identity=22.6130653266332, Blast_Score=86, Evalue=8e-17,
Organism=Homo sapiens, GI171184406, Length=398, Percent_Identity=22.6130653266332, Blast_Score=86, Evalue=8e-17,
Organism=Homo sapiens, GI171184404, Length=398, Percent_Identity=22.6130653266332, Blast_Score=86, Evalue=8e-17,
Organism=Homo sapiens, GI4507041, Length=402, Percent_Identity=23.6318407960199, Blast_Score=84, Evalue=3e-16,
Organism=Homo sapiens, GI33354281, Length=111, Percent_Identity=35.1351351351351, Blast_Score=83, Evalue=5e-16,
Organism=Homo sapiens, GI21361693, Length=111, Percent_Identity=35.1351351351351, Blast_Score=82, Evalue=8e-16,
Organism=Homo sapiens, GI58219014, Length=120, Percent_Identity=35, Blast_Score=82, Evalue=2e-15,
Organism=Homo sapiens, GI51468073, Length=302, Percent_Identity=21.8543046357616, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI197276625, Length=141, Percent_Identity=32.6241134751773, Blast_Score=73, Evalue=5e-13,
Organism=Homo sapiens, GI92859670, Length=120, Percent_Identity=33.3333333333333, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI6005715, Length=202, Percent_Identity=25.2475247524752, Blast_Score=69, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI133952791, Length=481, Percent_Identity=24.948024948025, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17554804, Length=476, Percent_Identity=24.5798319327731, Blast_Score=92, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17555248, Length=422, Percent_Identity=22.5118483412322, Blast_Score=86, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI25146584, Length=387, Percent_Identity=20.4134366925065, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17535731, Length=120, Percent_Identity=34.1666666666667, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI17136952, Length=372, Percent_Identity=21.505376344086, Blast_Score=102, Evalue=4e-22,
Organism=Drosophila melanogaster, GI281364394, Length=372, Percent_Identity=21.2365591397849, Blast_Score=100, Evalue=4e-21,
Organism=Drosophila melanogaster, GI28574704, Length=372, Percent_Identity=21.2365591397849, Blast_Score=100, Evalue=4e-21,
Organism=Drosophila melanogaster, GI17136950, Length=372, Percent_Identity=21.2365591397849, Blast_Score=100, Evalue=4e-21,
Organism=Drosophila melanogaster, GI28574702, Length=372, Percent_Identity=21.2365591397849, Blast_Score=100, Evalue=4e-21,
Organism=Drosophila melanogaster, GI45550877, Length=401, Percent_Identity=24.9376558603491, Blast_Score=89, Evalue=6e-18,
Organism=Drosophila melanogaster, GI24639514, Length=450, Percent_Identity=21.7777777777778, Blast_Score=89, Evalue=9e-18,
Organism=Drosophila melanogaster, GI221329674, Length=450, Percent_Identity=21.7777777777778, Blast_Score=89, Evalue=9e-18,
Organism=Drosophila melanogaster, GI24654186, Length=544, Percent_Identity=21.875, Blast_Score=83, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24639516, Length=470, Percent_Identity=20.8510638297872, Blast_Score=83, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24661428, Length=383, Percent_Identity=23.2375979112272, Blast_Score=83, Evalue=5e-16,
Organism=Drosophila melanogaster, GI45551088, Length=382, Percent_Identity=23.0366492146597, Blast_Score=82, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24762620, Length=385, Percent_Identity=23.6363636363636, Blast_Score=82, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24652942, Length=382, Percent_Identity=23.0366492146597, Blast_Score=82, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24655079, Length=315, Percent_Identity=26.031746031746, Blast_Score=79, Evalue=8e-15,
Organism=Drosophila melanogaster, GI281365034, Length=392, Percent_Identity=22.4489795918367, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI19921936, Length=364, Percent_Identity=23.6263736263736, Blast_Score=77, Evalue=3e-14,
Organism=Drosophila melanogaster, GI45551183, Length=60, Percent_Identity=46.6666666666667, Blast_Score=72, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24639853, Length=455, Percent_Identity=22.1978021978022, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI281363702, Length=372, Percent_Identity=23.3870967741935, Blast_Score=68, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 49205; Mature: 49205

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: PS00610 NA_NEUROTRAN_SYMP_1 ; PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTDTHVSNRWSSRYAYILAATGAAVGLGNIWKFPYIMGENGGGAFVFVYLLCIFLIGVP
CCCCCCCCCCCCCCEEEEEEECCHHHCCCCHHHCCEEEECCCCHHHHHHHHHHHHHHHHH
VMMAEVVIGKRGRSTPANAMTHVATESGHSSHWSIIGSIGVLAGFLILSFYAVIAGWAAA
HHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YVFFAGAGEFSAAAADPATNADVIGALFTDLITSVPQLLIWTTLTIVAVVYVISKGVKEG
HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LETAITYLMPTLFILLFGIMIYSAIVGDFAAAFTFMFHIDFSQLTIEGALVALGHAFFTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHHH
SLAMGIMMIYGAYLPKGVSIVKTSMMIAVADTVVALIAGLAIYPIVFAHGLEPSAGPGLL
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
FQSLPLAFGSMPFGDFVGVLFFVMVVFAAFTSAIALLESPTAYLVERQNVSRTKAAIIAG
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHH
AAVWILSLCTIYSFAGAEWTKLSFGMGGDIFEFLDYLTANILLPLGGILISIFAGWVIKP
HHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
EILKEEFNLSDKYFAIVLTLLRYVAPIGILLVFLNAIGLFK
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNTDTHVSNRWSSRYAYILAATGAAVGLGNIWKFPYIMGENGGGAFVFVYLLCIFLIGVP
CCCCCCCCCCCCCCEEEEEEECCHHHCCCCHHHCCEEEECCCCHHHHHHHHHHHHHHHHH
VMMAEVVIGKRGRSTPANAMTHVATESGHSSHWSIIGSIGVLAGFLILSFYAVIAGWAAA
HHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YVFFAGAGEFSAAAADPATNADVIGALFTDLITSVPQLLIWTTLTIVAVVYVISKGVKEG
HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LETAITYLMPTLFILLFGIMIYSAIVGDFAAAFTFMFHIDFSQLTIEGALVALGHAFFTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHHH
SLAMGIMMIYGAYLPKGVSIVKTSMMIAVADTVVALIAGLAIYPIVFAHGLEPSAGPGLL
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH
FQSLPLAFGSMPFGDFVGVLFFVMVVFAAFTSAIALLESPTAYLVERQNVSRTKAAIIAG
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHH
AAVWILSLCTIYSFAGAEWTKLSFGMGGDIFEFLDYLTANILLPLGGILISIFAGWVIKP
HHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
EILKEEFNLSDKYFAIVLTLLRYVAPIGILLVFLNAIGLFK
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]