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The map label for this gene is secD [H]

Identifier: 119945872

GI number: 119945872

Start: 2694386

End: 2696248

Strand: Reverse

Name: secD [H]

Synonym: Ping_2212

Alternate gene names: 119945872

Gene position: 2696248-2694386 (Counterclockwise)

Preceding gene: 119945873

Following gene: 119945871

Centisome position: 59.13

GC content: 40.96

Gene sequence:

>1863_bases
GTGTTAAATAAATACCCTATGTGGAAGTATTTGCTGCTTTTATTTATAGTTTTCATCAGTTTACTTTATGCAGCTCCGAA
TCTATACGGAGAAGATCCTGCCGTTCAAATATCTGCTACCCGTGGTGCAAAAGTCGAGCTTTCGACGTTGGGCGACGTTC
AAGATATTCTTAAACAGTCAAATATCATTCCTAAAAGTGCCGTTCTTGAAAATGATCAGCTTTTAATTCGTCTAAAATCC
AGTGAAGATCAATTATTAGCGCGTGAAACCATTATTGAAAAATTAGAGGGCGATTTTGTTACTGCGCTTAATTTGGCGCC
TTCAACACCTGCCTGGTTAGAAGCTATTGGTGCCGGGCCACTAAAATTAGGCCTTGATTTACGCGGCGGTGTTTATTTTC
TGATGGAAGTGGATATGGATGAGGCCGTCAGTAAAGCACAAGAGCAAATGGTGCAGGATTTACGTGGCGATTTACGGACA
GAAAAAATAAGATTTCGTGGTATCACTAAAGCGAATAGCGCAACGGGTGTACTTGTAACATTCACTGAGCAATCAATTTT
GGACAGTGCCATTGACTATTTAAAACCTAATAATCCAGGTTACCAATTTTCTGAATCCGTTGATAATGGCCGTTATATTC
TATCTATTGAAATGACGGAGCAGAAATTGCAGGCGAGCAAAGAGTACGCTCTGCAGCAAAATTTGACTATTCTTCGTAAC
CGAGTTAATGAACTTGGCGTTGCTGAACCTTTAGTTCAACGGCAAGGTACGGACAGAATTGTTGTTCAATTACCGGGTAT
TCAAGATACGGCACGTGCAAAAGAGATCCTGGGTGCAACGGCTACACTTGAGTTTCATGCAGTAGACTCAGAAACAAATA
TTAATGATGCATTAGCAGGACGTTTGCCTTCTTCATCAATTGTTTATAAGGAGAGAGATGGTCGCCCTGTCGTGGTTAAA
AAACAGATTATTTTAACTGGTAACCATATCGTGGATGCACAATCGGGCAGTGATGATATGGGGCGTCCTCAGGTTAGTAT
CTCACTTGATTCGCAAGGTGGCAGCATGATGTCCCGTTTTACCAAAAATAATATTGGTAAACCAATGGCTACCCTGTTTA
TTGAGTATTTACCGACAGGTAAGAAAAAACCGAACGGTAAGGCTATTATTGAAAAGCGTGAAGAAGTTGCCAATGTAGCC
ACTATTCAAGCGCAGCTTGGCCGTAGTTTTCGTATTACCGGACTTGATAACGCGGCAGAAGCACATAATCTGGCGCTATT
ACTGCGCGCCGGTGCGCTTATTGCACCTATTCAAATCGTCCAGGAACGTACTATTGGACCGAGTTTAGGACAAGAAAATA
TAGATAACGGCATTAAGGCAATGGTCTATGGCATGCTTGCTGTTGTCTTGTTTATGTTTGTTTATTATCGAAAATTTGGG
GTTATCGCCAATACGGCTTTGCTCTTCAATATCGTTATGATTATCGGTTTTATGTCTATGATCCCAGGGGCTACATTAAC
CTTACCTGGCATTGCCGGTATTGTCTTGACTGTGGGTATGGCCGTTGATGCGAATGTGCTTATATTTGAAAGAATTAGAG
AAGAATTAGCTGCTGGAAAATCAATCCAACAAGCAATTCATGAAGGCTATTCTAATGCATTTTCTACTATAGCGGATGCG
AATATTACTACTTTCATAACAGCATTAATTTTGTTTGCTGTGGGTACCGGACCAATTAAAGGTTTCGCTGTTACGCTCGC
GATTGGTATTGCGACTTCTATGTTTACTTCTATTTTTGGAACACGCGCTATTGTAAACGCTGTCTGGGGTGGTCGTAATG
ATATTAAGAAACTATCAATCTAG

Upstream 100 bases:

>100_bases
TATCTAAGAAACATTCAGCTTTTTTAATAGAGATAACGAAGTAAGAGACAAACATTACTTCGTTATCATTTTATTAGGCG
CTTCATTTAAGGACAATACA

Downstream 100 bases:

>100_bases
CGCAAGGAAATATTATGTTTGAGTTAATTAAATCGAAAAAAACGCTGCCTTTTATGCAATATTCGAAACCGGCATCTTGG
TTTTCAATGTTCTTAATTGT

Product: protein-export membrane protein SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 620; Mature: 620

Protein sequence:

>620_residues
MLNKYPMWKYLLLLFIVFISLLYAAPNLYGEDPAVQISATRGAKVELSTLGDVQDILKQSNIIPKSAVLENDQLLIRLKS
SEDQLLARETIIEKLEGDFVTALNLAPSTPAWLEAIGAGPLKLGLDLRGGVYFLMEVDMDEAVSKAQEQMVQDLRGDLRT
EKIRFRGITKANSATGVLVTFTEQSILDSAIDYLKPNNPGYQFSESVDNGRYILSIEMTEQKLQASKEYALQQNLTILRN
RVNELGVAEPLVQRQGTDRIVVQLPGIQDTARAKEILGATATLEFHAVDSETNINDALAGRLPSSSIVYKERDGRPVVVK
KQIILTGNHIVDAQSGSDDMGRPQVSISLDSQGGSMMSRFTKNNIGKPMATLFIEYLPTGKKKPNGKAIIEKREEVANVA
TIQAQLGRSFRITGLDNAAEAHNLALLLRAGALIAPIQIVQERTIGPSLGQENIDNGIKAMVYGMLAVVLFMFVYYRKFG
VIANTALLFNIVMIIGFMSMIPGATLTLPGIAGIVLTVGMAVDANVLIFERIREELAAGKSIQQAIHEGYSNAFSTIADA
NITTFITALILFAVGTGPIKGFAVTLAIGIATSMFTSIFGTRAIVNAVWGGRNDIKKLSI

Sequences:

>Translated_620_residues
MLNKYPMWKYLLLLFIVFISLLYAAPNLYGEDPAVQISATRGAKVELSTLGDVQDILKQSNIIPKSAVLENDQLLIRLKS
SEDQLLARETIIEKLEGDFVTALNLAPSTPAWLEAIGAGPLKLGLDLRGGVYFLMEVDMDEAVSKAQEQMVQDLRGDLRT
EKIRFRGITKANSATGVLVTFTEQSILDSAIDYLKPNNPGYQFSESVDNGRYILSIEMTEQKLQASKEYALQQNLTILRN
RVNELGVAEPLVQRQGTDRIVVQLPGIQDTARAKEILGATATLEFHAVDSETNINDALAGRLPSSSIVYKERDGRPVVVK
KQIILTGNHIVDAQSGSDDMGRPQVSISLDSQGGSMMSRFTKNNIGKPMATLFIEYLPTGKKKPNGKAIIEKREEVANVA
TIQAQLGRSFRITGLDNAAEAHNLALLLRAGALIAPIQIVQERTIGPSLGQENIDNGIKAMVYGMLAVVLFMFVYYRKFG
VIANTALLFNIVMIIGFMSMIPGATLTLPGIAGIVLTVGMAVDANVLIFERIREELAAGKSIQQAIHEGYSNAFSTIADA
NITTFITALILFAVGTGPIKGFAVTLAIGIATSMFTSIFGTRAIVNAVWGGRNDIKKLSI
>Mature_620_residues
MLNKYPMWKYLLLLFIVFISLLYAAPNLYGEDPAVQISATRGAKVELSTLGDVQDILKQSNIIPKSAVLENDQLLIRLKS
SEDQLLARETIIEKLEGDFVTALNLAPSTPAWLEAIGAGPLKLGLDLRGGVYFLMEVDMDEAVSKAQEQMVQDLRGDLRT
EKIRFRGITKANSATGVLVTFTEQSILDSAIDYLKPNNPGYQFSESVDNGRYILSIEMTEQKLQASKEYALQQNLTILRN
RVNELGVAEPLVQRQGTDRIVVQLPGIQDTARAKEILGATATLEFHAVDSETNINDALAGRLPSSSIVYKERDGRPVVVK
KQIILTGNHIVDAQSGSDDMGRPQVSISLDSQGGSMMSRFTKNNIGKPMATLFIEYLPTGKKKPNGKAIIEKREEVANVA
TIQAQLGRSFRITGLDNAAEAHNLALLLRAGALIAPIQIVQERTIGPSLGQENIDNGIKAMVYGMLAVVLFMFVYYRKFG
VIANTALLFNIVMIIGFMSMIPGATLTLPGIAGIVLTVGMAVDANVLIFERIREELAAGKSIQQAIHEGYSNAFSTIADA
NITTFITALILFAVGTGPIKGFAVTLAIGIATSMFTSIFGTRAIVNAVWGGRNDIKKLSI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=620, Percent_Identity=57.9032258064516, Blast_Score=728, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 67423; Mature: 67423

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNKYPMWKYLLLLFIVFISLLYAAPNLYGEDPAVQISATRGAKVELSTLGDVQDILKQS
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCEEEEHHHHHHHHHHHHC
NIIPKSAVLENDQLLIRLKSSEDQLLARETIIEKLEGDFVTALNLAPSTPAWLEAIGAGP
CCCCHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHCCCC
LKLGLDLRGGVYFLMEVDMDEAVSKAQEQMVQDLRGDLRTEKIRFRGITKANSATGVLVT
EEEEEEECCCEEEEEEECHHHHHHHHHHHHHHHHHHCHHHHHEEEEECCCCCCCCEEEEE
FTEQSILDSAIDYLKPNNPGYQFSESVDNGRYILSIEMTEQKLQASKEYALQQNLTILRN
ECHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHH
RVNELGVAEPLVQRQGTDRIVVQLPGIQDTARAKEILGATATLEFHAVDSETNINDALAG
HHHHCCCCCHHHHCCCCCEEEEEECCCCHHHHHHHHHCCEEEEEEEEECCCCCCCHHHHC
RLPSSSIVYKERDGRPVVVKKQIILTGNHIVDAQSGSDDMGRPQVSISLDSQGGSMMSRF
CCCCCCEEEEECCCCEEEEEEEEEEECCEEEECCCCCCCCCCCEEEEEECCCCCHHHHHH
TKNNIGKPMATLFIEYLPTGKKKPNGKAIIEKREEVANVATIQAQLGRSFRITGLDNAAE
HHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHH
AHNLALLLRAGALIAPIQIVQERTIGPSLGQENIDNGIKAMVYGMLAVVLFMFVYYRKFG
HHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIANTALLFNIVMIIGFMSMIPGATLTLPGIAGIVLTVGMAVDANVLIFERIREELAAGK
HHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCH
SIQQAIHEGYSNAFSTIADANITTFITALILFAVGTGPIKGFAVTLAIGIATSMFTSIFG
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
TRAIVNAVWGGRNDIKKLSI
HHHHHHHHCCCCCCHHHCCC
>Mature Secondary Structure
MLNKYPMWKYLLLLFIVFISLLYAAPNLYGEDPAVQISATRGAKVELSTLGDVQDILKQS
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCEEEEHHHHHHHHHHHHC
NIIPKSAVLENDQLLIRLKSSEDQLLARETIIEKLEGDFVTALNLAPSTPAWLEAIGAGP
CCCCHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHCCCC
LKLGLDLRGGVYFLMEVDMDEAVSKAQEQMVQDLRGDLRTEKIRFRGITKANSATGVLVT
EEEEEEECCCEEEEEEECHHHHHHHHHHHHHHHHHHCHHHHHEEEEECCCCCCCCEEEEE
FTEQSILDSAIDYLKPNNPGYQFSESVDNGRYILSIEMTEQKLQASKEYALQQNLTILRN
ECHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHH
RVNELGVAEPLVQRQGTDRIVVQLPGIQDTARAKEILGATATLEFHAVDSETNINDALAG
HHHHCCCCCHHHHCCCCCEEEEEECCCCHHHHHHHHHCCEEEEEEEEECCCCCCCHHHHC
RLPSSSIVYKERDGRPVVVKKQIILTGNHIVDAQSGSDDMGRPQVSISLDSQGGSMMSRF
CCCCCCEEEEECCCCEEEEEEEEEEECCEEEECCCCCCCCCCCEEEEEECCCCCHHHHHH
TKNNIGKPMATLFIEYLPTGKKKPNGKAIIEKREEVANVATIQAQLGRSFRITGLDNAAE
HHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHH
AHNLALLLRAGALIAPIQIVQERTIGPSLGQENIDNGIKAMVYGMLAVVLFMFVYYRKFG
HHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIANTALLFNIVMIIGFMSMIPGATLTLPGIAGIVLTVGMAVDANVLIFERIREELAAGK
HHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCH
SIQQAIHEGYSNAFSTIADANITTFITALILFAVGTGPIKGFAVTLAIGIATSMFTSIFG
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
TRAIVNAVWGGRNDIKKLSI
HHHHHHHHCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]