| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
Click here to switch to the map view.
The map label for this gene is prc [H]
Identifier: 119945847
GI number: 119945847
Start: 2660945
End: 2662939
Strand: Reverse
Name: prc [H]
Synonym: Ping_2187
Alternate gene names: 119945847
Gene position: 2662939-2660945 (Counterclockwise)
Preceding gene: 119945848
Following gene: 119945844
Centisome position: 58.4
GC content: 37.04
Gene sequence:
>1995_bases ATGAACAAATATTTTCGACACTTAGCCGTTATAGCAAGTTATTTATATATTGGTATTGTATGCGCTGTTCCAGCCGATTT TGATAGCGCAGATATCCCTCAATTAGAGCAACAAGCACAGCATGCTAAAGTGACGAAAAGAGTGAGCGACTTATTCAGTC GTTCTCACTACAAATATATACCCTTGAATGATGCTCTTTCGCAACAAGTGTTTGAGCGTTATATCGAGCAGCTTGATTAT AATAAACAAATCTTTATGCAAAGCGATATCAATGATTTAAAAAGCTATCAATTTTTGCTTGATGATAATTTAAAAACGGG TCAATTACAGCCTGCCTATGAAATTTATCAGCTTAGTCTAAAACGCCGTTATGAACGTTTTAGTTATGCATTATCTTTGC TAGACAAAGAGATTATGTTTGACACAACTGATGAGTTTCAATTTGACCGTAGCAAGGCACCCTGGGCAAAAGACACTGTT GAACTGAATAAAATTTGGCAACAAAAAGTAAAATCCGATGCTTTAGTCCTTAAATTAAGCGGTAAAACATGGGATAAAAT CAAAGAGCTATTAAGTAAACGTTACAACTATGCACTTAAACATTTGACCCAAACTGAAAGTGAAGATGTTTTTCAAACTT TTATGAATGCTTATGCGCGAACTATTGAACCCCATACAAGCTATTTGTCACCCCGCAATGCTGAACGTTTTAAAATGGAA ATGAACTTATCTCTGGAAGGGATAGGCGCTGTTCTGCAACTCGAAGATGATTATACGGTTATCAGAAGCCTTGTTCCCGG TGGACCCGCAGAGCGTTCTAATCAGATATTCAAAAATGATAAAATAATAGGCGTCGGACAAGAAGATGGAAAAGTTGTCG ATGTGGTTGGATGGCGCTTAGATGATATTGTCGATTTAATAAAAGGCCCGAAGGGAACCGATGTTAAATTACAGATTTTA TCGGGTAAAGCCGGCGATAAAAGCAAGATTGTGATCATCACGCGCGAACAAATACATCTTGAAGACCGTGAAGCAAAATC ATCTGTAGAAGTGATTGATGGTCAAAAAATTGGTGTTATTACTATTCCAAGCTTTTACATGAACTTAAGTGAAGATGTTG ACCAAGAATTAGCTTTATTAGCAAAAGAAAATATTAAAGGTATTATTATTGATTTGCGCAATAATGGCGGTGGCGCATTA AGCGAAGCGACACTATTAACCGGTTTGTTTATTGGAACAGGGCCCGTTGTGCAGGTACGGGATGGACGTAATCAAGTTCT GGTTCATCAGGATGAAAATAAAGCGGTAAGTTATAAAGGGCCATTAACTGTTCTGATTAATCGCAATAGTGCCTCTGCTT CTGAAATATTTGCTGCCGCTTTACAAGATTATGGCCGTGCAATTATCCTTGGCGAACAAAGTTTTGGAAAGGGGACAGTA CAACAACACCGCCGTATATCTCGATTTTATGATAAAGATGCCGATCTGGTGGGGTCAGTTCAATATACTATTGCAAAATT TTATCGTATCGACGGTGGCAGTACGCAAAACAAAGGGGTTATTCCTGATATTCAATTCCCAAGTGGGATCGATCCTAATG AGACAGGTGAAAGTCTGGAAAAAAATGCATTACCTTGGGATAATATAAAATCAGCCGATTATTCTCCGGTAAATAATTTA CAATCTGTTGTTAAGTCATTGACTGAAAAGCACAATTTACGTATTAAAAATAAAATTGAGTTTAGTTATTTAGAAAAAGA TATTGAAGAATATCTTCAAGAAAAAGATATGACGACCATTTCTCTTAAAGAAAGTGATCGGATTAAATTACGAGAAGAAC AGGAAAAGGAATCATTAGTACGGGTTAACGAACGTTTAAAACGTGCCGGTTTACCCGAGGTAAAATCTGTCGATGATATT CCAGATGATTTTGAACCTATCGACTCATTTTTACTTGAAGCGGCTGCTATTACGCTGGATTATGCTCATTCTTAA
Upstream 100 bases:
>100_bases GTTGTTGTTGAAATTTCAAAGGATGATATTCAGGTAGAACTGGCTTCTGGAATGATGGTTAAAGTTAAAGCCAAACATCT AATTGTGTAAAGGAATCTTG
Downstream 100 bases:
>100_bases CTTTTAAGCTTGATTTTTAGGCCGGCTATCTAGCCGGCTTTTTTATGTTTGTAGTATTAACAAACGACAGGTTGTGAATT TACTTCGGTTAATTTTAACT
Product: carboxy-terminal protease
Products: NA
Alternate protein names: C-terminal-processing peptidase; PRC protein; Protease Re [H]
Number of amino acids: Translated: 664; Mature: 664
Protein sequence:
>664_residues MNKYFRHLAVIASYLYIGIVCAVPADFDSADIPQLEQQAQHAKVTKRVSDLFSRSHYKYIPLNDALSQQVFERYIEQLDY NKQIFMQSDINDLKSYQFLLDDNLKTGQLQPAYEIYQLSLKRRYERFSYALSLLDKEIMFDTTDEFQFDRSKAPWAKDTV ELNKIWQQKVKSDALVLKLSGKTWDKIKELLSKRYNYALKHLTQTESEDVFQTFMNAYARTIEPHTSYLSPRNAERFKME MNLSLEGIGAVLQLEDDYTVIRSLVPGGPAERSNQIFKNDKIIGVGQEDGKVVDVVGWRLDDIVDLIKGPKGTDVKLQIL SGKAGDKSKIVIITREQIHLEDREAKSSVEVIDGQKIGVITIPSFYMNLSEDVDQELALLAKENIKGIIIDLRNNGGGAL SEATLLTGLFIGTGPVVQVRDGRNQVLVHQDENKAVSYKGPLTVLINRNSASASEIFAAALQDYGRAIILGEQSFGKGTV QQHRRISRFYDKDADLVGSVQYTIAKFYRIDGGSTQNKGVIPDIQFPSGIDPNETGESLEKNALPWDNIKSADYSPVNNL QSVVKSLTEKHNLRIKNKIEFSYLEKDIEEYLQEKDMTTISLKESDRIKLREEQEKESLVRVNERLKRAGLPEVKSVDDI PDDFEPIDSFLLEAAAITLDYAHS
Sequences:
>Translated_664_residues MNKYFRHLAVIASYLYIGIVCAVPADFDSADIPQLEQQAQHAKVTKRVSDLFSRSHYKYIPLNDALSQQVFERYIEQLDY NKQIFMQSDINDLKSYQFLLDDNLKTGQLQPAYEIYQLSLKRRYERFSYALSLLDKEIMFDTTDEFQFDRSKAPWAKDTV ELNKIWQQKVKSDALVLKLSGKTWDKIKELLSKRYNYALKHLTQTESEDVFQTFMNAYARTIEPHTSYLSPRNAERFKME MNLSLEGIGAVLQLEDDYTVIRSLVPGGPAERSNQIFKNDKIIGVGQEDGKVVDVVGWRLDDIVDLIKGPKGTDVKLQIL SGKAGDKSKIVIITREQIHLEDREAKSSVEVIDGQKIGVITIPSFYMNLSEDVDQELALLAKENIKGIIIDLRNNGGGAL SEATLLTGLFIGTGPVVQVRDGRNQVLVHQDENKAVSYKGPLTVLINRNSASASEIFAAALQDYGRAIILGEQSFGKGTV QQHRRISRFYDKDADLVGSVQYTIAKFYRIDGGSTQNKGVIPDIQFPSGIDPNETGESLEKNALPWDNIKSADYSPVNNL QSVVKSLTEKHNLRIKNKIEFSYLEKDIEEYLQEKDMTTISLKESDRIKLREEQEKESLVRVNERLKRAGLPEVKSVDDI PDDFEPIDSFLLEAAAITLDYAHS >Mature_664_residues MNKYFRHLAVIASYLYIGIVCAVPADFDSADIPQLEQQAQHAKVTKRVSDLFSRSHYKYIPLNDALSQQVFERYIEQLDY NKQIFMQSDINDLKSYQFLLDDNLKTGQLQPAYEIYQLSLKRRYERFSYALSLLDKEIMFDTTDEFQFDRSKAPWAKDTV ELNKIWQQKVKSDALVLKLSGKTWDKIKELLSKRYNYALKHLTQTESEDVFQTFMNAYARTIEPHTSYLSPRNAERFKME MNLSLEGIGAVLQLEDDYTVIRSLVPGGPAERSNQIFKNDKIIGVGQEDGKVVDVVGWRLDDIVDLIKGPKGTDVKLQIL SGKAGDKSKIVIITREQIHLEDREAKSSVEVIDGQKIGVITIPSFYMNLSEDVDQELALLAKENIKGIIIDLRNNGGGAL SEATLLTGLFIGTGPVVQVRDGRNQVLVHQDENKAVSYKGPLTVLINRNSASASEIFAAALQDYGRAIILGEQSFGKGTV QQHRRISRFYDKDADLVGSVQYTIAKFYRIDGGSTQNKGVIPDIQFPSGIDPNETGESLEKNALPWDNIKSADYSPVNNL QSVVKSLTEKHNLRIKNKIEFSYLEKDIEEYLQEKDMTTISLKESDRIKLREEQEKESLVRVNERLKRAGLPEVKSVDDI PDDFEPIDSFLLEAAAITLDYAHS
Specific function: Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3 (PBP3). May be involved in protection of the bacterium from thermal and osmotic stresses [H]
COG id: COG0793
COG function: function code M; Periplasmic protease
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein; Periplasmic side [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PDZ (DHR) domain [H]
Homologues:
Organism=Escherichia coli, GI1788134, Length=668, Percent_Identity=50.748502994012, Blast_Score=671, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001478 - InterPro: IPR005151 - InterPro: IPR004447 - InterPro: IPR020992 [H]
Pfam domain/function: PF11818 DUF3340; PF00595 PDZ; PF03572 Peptidase_S41 [H]
EC number: =3.4.21.102 [H]
Molecular weight: Translated: 75339; Mature: 75339
Theoretical pI: Translated: 5.24; Mature: 5.24
Prosite motif: PS50106 PDZ
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKYFRHLAVIASYLYIGIVCAVPADFDSADIPQLEQQAQHAKVTKRVSDLFSRSHYKYI CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEE PLNDALSQQVFERYIEQLDYNKQIFMQSDINDLKSYQFLLDDNLKTGQLQPAYEIYQLSL CCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHEECCCCCCCCCCCHHHHHHHHH KRRYERFSYALSLLDKEIMFDTTDEFQFDRSKAPWAKDTVELNKIWQQKVKSDALVLKLS HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEC GKTWDKIKELLSKRYNYALKHLTQTESEDVFQTFMNAYARTIEPHTSYLSPRNAERFKME CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCEEEE MNLSLEGIGAVLQLEDDYTVIRSLVPGGPAERSNQIFKNDKIIGVGQEDGKVVDVVGWRL ECCEEECCCEEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCH DDIVDLIKGPKGTDVKLQILSGKAGDKSKIVIITREQIHLEDREAKSSVEVIDGQKIGVI HHHHHHHCCCCCCCEEEEEEECCCCCCCEEEEEEECEECCCCHHCCCCEEEECCCEEEEE TIPSFYMNLSEDVDQELALLAKENIKGIIIDLRNNGGGALSEATLLTGLFIGTGPVVQVR ECCHHHHCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHEECCCCEEEEE DGRNQVLVHQDENKAVSYKGPLTVLINRNSASASEIFAAALQDYGRAIILGEQSFGKGTV CCCCEEEEEECCCCEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHH QQHRRISRFYDKDADLVGSVQYTIAKFYRIDGGSTQNKGVIPDIQFPSGIDPNETGESLE HHHHHHHHHHCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHH KNALPWDNIKSADYSPVNNLQSVVKSLTEKHNLRIKNKIEFSYLEKDIEEYLQEKDMTTI HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHCCCEEE SLKESDRIKLREEQEKESLVRVNERLKRAGLPEVKSVDDIPDDFEPIDSFLLEAAAITLD EECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEE YAHS CCCC >Mature Secondary Structure MNKYFRHLAVIASYLYIGIVCAVPADFDSADIPQLEQQAQHAKVTKRVSDLFSRSHYKYI CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEE PLNDALSQQVFERYIEQLDYNKQIFMQSDINDLKSYQFLLDDNLKTGQLQPAYEIYQLSL CCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHEECCCCCCCCCCCHHHHHHHHH KRRYERFSYALSLLDKEIMFDTTDEFQFDRSKAPWAKDTVELNKIWQQKVKSDALVLKLS HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEC GKTWDKIKELLSKRYNYALKHLTQTESEDVFQTFMNAYARTIEPHTSYLSPRNAERFKME CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCEEEE MNLSLEGIGAVLQLEDDYTVIRSLVPGGPAERSNQIFKNDKIIGVGQEDGKVVDVVGWRL ECCEEECCCEEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCH DDIVDLIKGPKGTDVKLQILSGKAGDKSKIVIITREQIHLEDREAKSSVEVIDGQKIGVI HHHHHHHCCCCCCCEEEEEEECCCCCCCEEEEEEECEECCCCHHCCCCEEEECCCEEEEE TIPSFYMNLSEDVDQELALLAKENIKGIIIDLRNNGGGALSEATLLTGLFIGTGPVVQVR ECCHHHHCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHEECCCCEEEEE DGRNQVLVHQDENKAVSYKGPLTVLINRNSASASEIFAAALQDYGRAIILGEQSFGKGTV CCCCEEEEEECCCCEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHH QQHRRISRFYDKDADLVGSVQYTIAKFYRIDGGSTQNKGVIPDIQFPSGIDPNETGESLE HHHHHHHHHHCCCCCHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHH KNALPWDNIKSADYSPVNNLQSVVKSLTEKHNLRIKNKIEFSYLEKDIEEYLQEKDMTTI HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHHHCCCEEE SLKESDRIKLREEQEKESLVRVNERLKRAGLPEVKSVDDIPDDFEPIDSFLLEAAAITLD EECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEE YAHS CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1856173; 1729701; 9097040; 9278503; 1447154; 10049386; 7499412; 8576225 [H]