| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is mrcB [H]
Identifier: 119945823
GI number: 119945823
Start: 2639362
End: 2641560
Strand: Reverse
Name: mrcB [H]
Synonym: Ping_2163
Alternate gene names: 119945823
Gene position: 2641560-2639362 (Counterclockwise)
Preceding gene: 119945824
Following gene: 119945822
Centisome position: 57.93
GC content: 47.34
Gene sequence:
>2199_bases ATGGCCATTATTTATCTTGATTCCACCATTCGAACGACCTTTACGGGTAAAAAATGGTCTGTGCCATCAACAGTTTATGC GCGGCCTTTAGAGCTATATGAAGGGGCACCGCTCACCATAAGAGACTTCAAAATAGAGTTAGGGATGTTGGGTTATCATT TTGTATCTCGTCTTGAAAATCCTGGCCAAGCCAGTATTACGGGTAATACAGTTAATATTTATACCTCCGGATTTCAGTTT AGTGATGACCTTGAGCCCGCCCGTAAGGTTGCTCTCCATATACAAGACGGGGTGGTTTCCGAGCTCGTTAGCAATGATGG TGCCCAATTACTGCGTTTAGAACCTCTTGCAATCGGCGGCATTTACCCTTCACATCATGAAGATCGTCTATTGGTTAAGC TTTCTGAAGTACCGGAATCGCTACAAAATATGCTAGTCGCGGTGGAGGATAACCGTTTTTACAGTCATATTGGTATTTCC CCGCGCGGTATTGTCCGTGCATTAATCGCCAACATTAAAGAGGGCGGCATTTCTCAGGGCGCTTCGACGCTGACTCAGCA GCTGGTTAAAAATTATTACCTTACTTCCGAGCAAACCTTAAGTCGTAAAGCGAAGGAAGCTTTAATGGCTTTACTGCTCG AGCTGCATTTCAGTAAGTCTGAAATTTTAGAGGGTTATATTAACGAGGTCTACTTAGGCCAGGATGGCCCAAGGTCTATT CATGGTTTTGGCCTCGCAAGTCAGTATTATTTTAATCGTCCATTGTCTGATTTGTCGATAGCGCAGCAGGCGTTGTTGGT GGCTTTGGTCAGGGGGGCAAATTATTACAATCCTTGGCGTAATCCTGAGCGGGCTTTAGAACGTCGAAATCTCGTCTTAG ATATTGCCGTGCGCGAAGAACGCCTGGATCTTGATTTGGCCGAAAGGGCTAAAAAACGTCCGTTGGAAATTGGCGGACCG AGTGTCGCAAGTCATCGACGCTATCCCGCTTACTTGGATCTGGTGCGCCGACAGTTGCAGCGCGACTATAAAGAAGAAGA TCTTAGTTCCAGCGGCCTGGCAATTTTTACCCATTTTGATCCGCTTGTACAGACGAGTGCCGAGTCAAGTCTTGCTGCTA ATATTGCCAAACACAAGTCCAGTGGAAAGAGTGACGAATTACAGGGTGCTGTAGTTATTACGCGCCCCAATACGGGAGCC GTGATCGCTGTTCTTGGTGGTAAAGATGGCCGTTATGCCGGTTTTAATCGTGCACTGGATGCGCGCCGTCAAATAGGTTC CCTGCTTAAGCCTGCCGTTTATTTGGCAGCCCTTGAACAGCCAGAACGTTATACCCTAGCGACACTGATAAGTGATGACG AATATATATTACAGCTGCCTAATGGTGATCAGTGGGCCCCGAAAAATTATGATCTTGATAGTCATGGTGATGTGCTGTTA TATAAAGCGCTCGCCCATTCTTATAATCAGGCGACGGCGCGTTTAGGTAATACTATCGGGATCGATAAGGTGGTTGATAC CGTTCATCGTTTGGGGGTCGAGCAAAACTTTCCTGCATTACCTTCGGTGACGCTGGGAGCCGTCGATCTGCTACCTGTTG AAGTTGCACAGATCTACCAAACAATCGCAGCGGACGGTTTTTACACCCCTTTAATGGCGATCAATGCGGTTGTCGAGCCC GGAGGTGAGTTATTAACCAGTTACCCTCTGGAGGTTGATAAACGTTTTGATGCGGCATCGATTTATATGTTGAGTCATGC CCTGCAGGCGGTTACCCACGAAGGGACGGCTAAGTCTTTAGAGTGGTTGTTACCTGATTTCCCCGTTGCAGGCAAGACAG GTACAACAAATGATCTTCGCGATAGCTGGTTTGCCGGCTTTTCCGGCGATATGATGGCGGTTGTGTGGTTAGGGAACGAT GATAATAGCAGTACCGGCTTGACGGGCTCCAGTGGTGCGCTGCGTGTGTGGGCTGATATTTTTAAGCAGCGTTCACGCTT GCCTATTCAAAATTTACCCCCTGAAGATATCAAAATGGTGTGGGTTGACAGGGATACGGGGCAGGGTAGCCAGCCGTCTT GTACTAACACTATTCCACTCCCCTTTGTGGTGGGCACTGAGCCCGATCAAGAGATTCGTTGTCAACCGGGAGCGACCAAG GTAATTGATTGGTTTAAAAAATTAGTAGATAAAATATGA
Upstream 100 bases:
>100_bases GCGCAAAAAAGAGGTAGATGTGTTGATTACAAATAAAAAGAAAAAGTCTAAATTGGTATTATGGTGGAAGTTATTTCTGG TCGGATCGGTGATTTCACTA
Downstream 100 bases:
>100_bases GACAATTATGAATTTTTTTAATAAATGTGCAGTGCTGTGTTTGCCATGGATTTTGGTGGCTTGTAGCACAATACCCACTC AACCTATTGATAAAACTAAA
Product: penicillin-binding protein 1B
Products: NA
Alternate protein names: PBP-1b; PBP1b; Murein polymerase; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Peptidoglycan glycosyltransferase; Penicillin-sensitive transpeptidase; DD-transpeptidase [H]
Number of amino acids: Translated: 732; Mature: 731
Protein sequence:
>732_residues MAIIYLDSTIRTTFTGKKWSVPSTVYARPLELYEGAPLTIRDFKIELGMLGYHFVSRLENPGQASITGNTVNIYTSGFQF SDDLEPARKVALHIQDGVVSELVSNDGAQLLRLEPLAIGGIYPSHHEDRLLVKLSEVPESLQNMLVAVEDNRFYSHIGIS PRGIVRALIANIKEGGISQGASTLTQQLVKNYYLTSEQTLSRKAKEALMALLLELHFSKSEILEGYINEVYLGQDGPRSI HGFGLASQYYFNRPLSDLSIAQQALLVALVRGANYYNPWRNPERALERRNLVLDIAVREERLDLDLAERAKKRPLEIGGP SVASHRRYPAYLDLVRRQLQRDYKEEDLSSSGLAIFTHFDPLVQTSAESSLAANIAKHKSSGKSDELQGAVVITRPNTGA VIAVLGGKDGRYAGFNRALDARRQIGSLLKPAVYLAALEQPERYTLATLISDDEYILQLPNGDQWAPKNYDLDSHGDVLL YKALAHSYNQATARLGNTIGIDKVVDTVHRLGVEQNFPALPSVTLGAVDLLPVEVAQIYQTIAADGFYTPLMAINAVVEP GGELLTSYPLEVDKRFDAASIYMLSHALQAVTHEGTAKSLEWLLPDFPVAGKTGTTNDLRDSWFAGFSGDMMAVVWLGND DNSSTGLTGSSGALRVWADIFKQRSRLPIQNLPPEDIKMVWVDRDTGQGSQPSCTNTIPLPFVVGTEPDQEIRCQPGATK VIDWFKKLVDKI
Sequences:
>Translated_732_residues MAIIYLDSTIRTTFTGKKWSVPSTVYARPLELYEGAPLTIRDFKIELGMLGYHFVSRLENPGQASITGNTVNIYTSGFQF SDDLEPARKVALHIQDGVVSELVSNDGAQLLRLEPLAIGGIYPSHHEDRLLVKLSEVPESLQNMLVAVEDNRFYSHIGIS PRGIVRALIANIKEGGISQGASTLTQQLVKNYYLTSEQTLSRKAKEALMALLLELHFSKSEILEGYINEVYLGQDGPRSI HGFGLASQYYFNRPLSDLSIAQQALLVALVRGANYYNPWRNPERALERRNLVLDIAVREERLDLDLAERAKKRPLEIGGP SVASHRRYPAYLDLVRRQLQRDYKEEDLSSSGLAIFTHFDPLVQTSAESSLAANIAKHKSSGKSDELQGAVVITRPNTGA VIAVLGGKDGRYAGFNRALDARRQIGSLLKPAVYLAALEQPERYTLATLISDDEYILQLPNGDQWAPKNYDLDSHGDVLL YKALAHSYNQATARLGNTIGIDKVVDTVHRLGVEQNFPALPSVTLGAVDLLPVEVAQIYQTIAADGFYTPLMAINAVVEP GGELLTSYPLEVDKRFDAASIYMLSHALQAVTHEGTAKSLEWLLPDFPVAGKTGTTNDLRDSWFAGFSGDMMAVVWLGND DNSSTGLTGSSGALRVWADIFKQRSRLPIQNLPPEDIKMVWVDRDTGQGSQPSCTNTIPLPFVVGTEPDQEIRCQPGATK VIDWFKKLVDKI >Mature_731_residues AIIYLDSTIRTTFTGKKWSVPSTVYARPLELYEGAPLTIRDFKIELGMLGYHFVSRLENPGQASITGNTVNIYTSGFQFS DDLEPARKVALHIQDGVVSELVSNDGAQLLRLEPLAIGGIYPSHHEDRLLVKLSEVPESLQNMLVAVEDNRFYSHIGISP RGIVRALIANIKEGGISQGASTLTQQLVKNYYLTSEQTLSRKAKEALMALLLELHFSKSEILEGYINEVYLGQDGPRSIH GFGLASQYYFNRPLSDLSIAQQALLVALVRGANYYNPWRNPERALERRNLVLDIAVREERLDLDLAERAKKRPLEIGGPS VASHRRYPAYLDLVRRQLQRDYKEEDLSSSGLAIFTHFDPLVQTSAESSLAANIAKHKSSGKSDELQGAVVITRPNTGAV IAVLGGKDGRYAGFNRALDARRQIGSLLKPAVYLAALEQPERYTLATLISDDEYILQLPNGDQWAPKNYDLDSHGDVLLY KALAHSYNQATARLGNTIGIDKVVDTVHRLGVEQNFPALPSVTLGAVDLLPVEVAQIYQTIAADGFYTPLMAINAVVEPG GELLTSYPLEVDKRFDAASIYMLSHALQAVTHEGTAKSLEWLLPDFPVAGKTGTTNDLRDSWFAGFSGDMMAVVWLGNDD NSSTGLTGSSGALRVWADIFKQRSRLPIQNLPPEDIKMVWVDRDTGQGSQPSCTNTIPLPFVVGTEPDQEIRCQPGATKV IDWFKKLVDKI
Specific function: Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal
COG id: COG0744
COG function: function code M; Membrane carboxypeptidase (penicillin-binding protein)
Gene ontology:
Cell location: Cell inner membrane; Single-pass type II membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI1786343, Length=689, Percent_Identity=40.4934687953556, Blast_Score=479, Evalue=1e-136, Organism=Escherichia coli, GI87082258, Length=249, Percent_Identity=32.9317269076305, Blast_Score=143, Evalue=4e-35, Organism=Escherichia coli, GI1788867, Length=555, Percent_Identity=25.9459459459459, Blast_Score=113, Evalue=5e-26, Organism=Escherichia coli, GI1789601, Length=145, Percent_Identity=33.7931034482759, Blast_Score=73, Evalue=7e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011813 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: =2.4.1.129 [H]
Molecular weight: Translated: 80750; Mature: 80618
Theoretical pI: Translated: 5.78; Mature: 5.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIIYLDSTIRTTFTGKKWSVPSTVYARPLELYEGAPLTIRDFKIELGMLGYHFVSRLEN CEEEEEECCEEEEECCCCCCCCCHHHHCCHHHHCCCCCEEEEEEEEEHHHHHHHHHHCCC PGQASITGNTVNIYTSGFQFSDDLEPARKVALHIQDGVVSELVSNDGAQLLRLEPLAIGG CCCCEEECCEEEEEECCCCCCCCCCHHHHEEEEECHHHHHHHHCCCCCEEEEECCEEEEC IYPSHHEDRLLVKLSEVPESLQNMLVAVEDNRFYSHIGISPRGIVRALIANIKEGGISQG CCCCCCCCEEEEEHHHHHHHHHHCEEEEECCCEEEECCCCHHHHHHHHHHHHHCCCCCCH ASTLTQQLVKNYYLTSEQTLSRKAKEALMALLLELHFSKSEILEGYINEVYLGQDGPRSI HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHEEEECCCCCCCE HGFGLASQYYFNRPLSDLSIAQQALLVALVRGANYYNPWRNPERALERRNLVLDIAVREE ECCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCEEEEEEEEHH RLDLDLAERAKKRPLEIGGPSVASHRRYPAYLDLVRRQLQRDYKEEDLSSSGLAIFTHFD HCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC PLVQTSAESSLAANIAKHKSSGKSDELQGAVVITRPNTGAVIAVLGGKDGRYAGFNRALD HHHHHCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCHHHHHH ARRQIGSLLKPAVYLAALEQPERYTLATLISDDEYILQLPNGDQWAPKNYDLDSHGDVLL HHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCEEH YKALAHSYNQATARLGNTIGIDKVVDTVHRLGVEQNFPALPSVTLGAVDLLPVEVAQIYQ HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHCCHHHHHHHHHHHHH TIAADGFYTPLMAINAVVEPGGELLTSYPLEVDKRFDAASIYMLSHALQAVTHEGTAKSL HHHCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHH EWLLPDFPVAGKTGTTNDLRDSWFAGFSGDMMAVVWLGNDDNSSTGLTGSSGALRVWADI HHHCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHH FKQRSRLPIQNLPPEDIKMVWVDRDTGQGSQPSCTNTIPLPFVVGTEPDQEIRCQPGATK HHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCHH VIDWFKKLVDKI HHHHHHHHHHCC >Mature Secondary Structure AIIYLDSTIRTTFTGKKWSVPSTVYARPLELYEGAPLTIRDFKIELGMLGYHFVSRLEN EEEEEECCEEEEECCCCCCCCCHHHHCCHHHHCCCCCEEEEEEEEEHHHHHHHHHHCCC PGQASITGNTVNIYTSGFQFSDDLEPARKVALHIQDGVVSELVSNDGAQLLRLEPLAIGG CCCCEEECCEEEEEECCCCCCCCCCHHHHEEEEECHHHHHHHHCCCCCEEEEECCEEEEC IYPSHHEDRLLVKLSEVPESLQNMLVAVEDNRFYSHIGISPRGIVRALIANIKEGGISQG CCCCCCCCEEEEEHHHHHHHHHHCEEEEECCCEEEECCCCHHHHHHHHHHHHHCCCCCCH ASTLTQQLVKNYYLTSEQTLSRKAKEALMALLLELHFSKSEILEGYINEVYLGQDGPRSI HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHEEEECCCCCCCE HGFGLASQYYFNRPLSDLSIAQQALLVALVRGANYYNPWRNPERALERRNLVLDIAVREE ECCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCEEEEEEEEHH RLDLDLAERAKKRPLEIGGPSVASHRRYPAYLDLVRRQLQRDYKEEDLSSSGLAIFTHFD HCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC PLVQTSAESSLAANIAKHKSSGKSDELQGAVVITRPNTGAVIAVLGGKDGRYAGFNRALD HHHHHCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCCCHHHHHH ARRQIGSLLKPAVYLAALEQPERYTLATLISDDEYILQLPNGDQWAPKNYDLDSHGDVLL HHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCEEH YKALAHSYNQATARLGNTIGIDKVVDTVHRLGVEQNFPALPSVTLGAVDLLPVEVAQIYQ HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHCCHHHHHHHHHHHHH TIAADGFYTPLMAINAVVEPGGELLTSYPLEVDKRFDAASIYMLSHALQAVTHEGTAKSL HHHCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHH EWLLPDFPVAGKTGTTNDLRDSWFAGFSGDMMAVVWLGNDDNSSTGLTGSSGALRVWADI HHHCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHHHHHHH FKQRSRLPIQNLPPEDIKMVWVDRDTGQGSQPSCTNTIPLPFVVGTEPDQEIRCQPGATK HHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCEEECCCCHH VIDWFKKLVDKI HHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]