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The map label for this gene is cph2 [H]

Identifier: 119945812

GI number: 119945812

Start: 2622012

End: 2623004

Strand: Reverse

Name: cph2 [H]

Synonym: Ping_2150

Alternate gene names: 119945812

Gene position: 2623004-2622012 (Counterclockwise)

Preceding gene: 119945814

Following gene: 119945811

Centisome position: 57.53

GC content: 35.75

Gene sequence:

>993_bases
ATGAGGTTATCTTCCCTGGAAAAACATATTCAAGAGTTAAACCGTTATCTTAATTTCCACAAGGTTTGCTGGTGGATTAT
GGATATTGAAAATGAGCCCGATCTCTTTTATTGCAATCAGTATATGGAGGATGTCTTTAACCTTGATAAATCTTTACCCT
ACCACTCTGTTTCTAATACTTGCCCTATCGCGGGTGATTATCTTAAAAATGTTGAGCTAAAATCATCTCAGCAGGCGAAA
TTAATATTGGCTGAATATCAGGATTTACTCAATCAAAAAACCGCAGAGTACAAAAATCAATTTCCCTATTTTGATCCAAG
AACAAATATCACTCATTACTTTACAAGCAGGGCTAAGATACTTGAGCTTAACGATCAAGGAGAGGTCGCCATAATTTATG
GCATTATTGAAGATACCACCGCAATAGTACGCCAGTATCGAAGGATAAAAAAACAACATAAGATGTTCAAAGAATTAAGT
GAAACTGATCCATTAACGGGGTTAGGCAACAAACGTTTTTTTATGAAATTACTTGGGTTCAGCTTTGATAAAGCGCAACG
AGAGCAGACTGAGCTAGCAGTATTAATGATAGATATCGACTATTTTAAGTTATATAACGACTATTATGGTCACCTGAAGG
GTGATCAGTGCTTAAAGCAGGTGGCTAATGCGATTAAAAACTCCTTATCCAGGAAAACGGACATTGTCGCAAGATTTGGC
GGAGAGGAATTTATTATCTTTTTTACGGGGGCGAGTGCGCAGCAGACATTACAGTTAGCCGAGTTGATAAAAAATAATGT
TGAGTTATGTCAAATTACTCATCCAAAATCACCTGTCTCTGATTATGTTACAGTGAGTATCGGCGCTTATATAAAAATTC
CATCGATCGAAAATTATGCAGCAGAAACATTTATTAAATATGCTGATAAAAATTTATATAAGGCGAAATCATTAGGACGT
AACAAAACCGTTATTAATGAATCAAGTCTGTAA

Upstream 100 bases:

>100_bases
ATGCGATAAATAGCAACCTGCTCAAGTATTAAGCCTTGAGTTATGCTCTTCTGTCGAGAAAAACACAGCTAAAGATTGTG
TACAAAGGATGTTCGAATTT

Downstream 100 bases:

>100_bases
TATCATCCTTATAAATTAAAAAAATGAATGTCATTTTTTTAATTTATTAATGTTATTTCTTAGTGTTATCTAATCTGTTG
ATGCACAAAATATAAAGATT

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MRLSSLEKHIQELNRYLNFHKVCWWIMDIENEPDLFYCNQYMEDVFNLDKSLPYHSVSNTCPIAGDYLKNVELKSSQQAK
LILAEYQDLLNQKTAEYKNQFPYFDPRTNITHYFTSRAKILELNDQGEVAIIYGIIEDTTAIVRQYRRIKKQHKMFKELS
ETDPLTGLGNKRFFMKLLGFSFDKAQREQTELAVLMIDIDYFKLYNDYYGHLKGDQCLKQVANAIKNSLSRKTDIVARFG
GEEFIIFFTGASAQQTLQLAELIKNNVELCQITHPKSPVSDYVTVSIGAYIKIPSIENYAAETFIKYADKNLYKAKSLGR
NKTVINESSL

Sequences:

>Translated_330_residues
MRLSSLEKHIQELNRYLNFHKVCWWIMDIENEPDLFYCNQYMEDVFNLDKSLPYHSVSNTCPIAGDYLKNVELKSSQQAK
LILAEYQDLLNQKTAEYKNQFPYFDPRTNITHYFTSRAKILELNDQGEVAIIYGIIEDTTAIVRQYRRIKKQHKMFKELS
ETDPLTGLGNKRFFMKLLGFSFDKAQREQTELAVLMIDIDYFKLYNDYYGHLKGDQCLKQVANAIKNSLSRKTDIVARFG
GEEFIIFFTGASAQQTLQLAELIKNNVELCQITHPKSPVSDYVTVSIGAYIKIPSIENYAAETFIKYADKNLYKAKSLGR
NKTVINESSL
>Mature_330_residues
MRLSSLEKHIQELNRYLNFHKVCWWIMDIENEPDLFYCNQYMEDVFNLDKSLPYHSVSNTCPIAGDYLKNVELKSSQQAK
LILAEYQDLLNQKTAEYKNQFPYFDPRTNITHYFTSRAKILELNDQGEVAIIYGIIEDTTAIVRQYRRIKKQHKMFKELS
ETDPLTGLGNKRFFMKLLGFSFDKAQREQTELAVLMIDIDYFKLYNDYYGHLKGDQCLKQVANAIKNSLSRKTDIVARFG
GEEFIIFFTGASAQQTLQLAELIKNNVELCQITHPKSPVSDYVTVSIGAYIKIPSIENYAAETFIKYADKNLYKAKSLGR
NKTVINESSL

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=193, Percent_Identity=34.7150259067358, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI145693134, Length=181, Percent_Identity=37.5690607734807, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1786584, Length=193, Percent_Identity=29.0155440414508, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI87082007, Length=177, Percent_Identity=32.2033898305085, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1787816, Length=167, Percent_Identity=35.3293413173653, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI87081881, Length=204, Percent_Identity=32.843137254902, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788085, Length=179, Percent_Identity=30.7262569832402, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1787541, Length=173, Percent_Identity=28.9017341040462, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787802, Length=143, Percent_Identity=36.3636363636364, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788381, Length=227, Percent_Identity=26.8722466960352, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081974, Length=123, Percent_Identity=30.0813008130081, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87081977, Length=87, Percent_Identity=39.0804597701149, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787056, Length=193, Percent_Identity=29.5336787564767, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788956, Length=172, Percent_Identity=28.4883720930233, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 38300; Mature: 38300

Theoretical pI: Translated: 7.88; Mature: 7.88

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLSSLEKHIQELNRYLNFHKVCWWIMDIENEPDLFYCNQYMEDVFNLDKSLPYHSVSNT
CCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCC
CPIAGDYLKNVELKSSQQAKLILAEYQDLLNQKTAEYKNQFPYFDPRTNITHYFTSRAKI
CCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHEECCCEEE
LELNDQGEVAIIYGIIEDTTAIVRQYRRIKKQHKMFKELSETDPLTGLGNKRFFMKLLGF
EEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCC
SFDKAQREQTELAVLMIDIDYFKLYNDYYGHLKGDQCLKQVANAIKNSLSRKTDIVARFG
CCCHHHHHHHCEEEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEC
GEEFIIFFTGASAQQTLQLAELIKNNVELCQITHPKSPVSDYVTVSIGAYIKIPSIENYA
CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEECCEEECCCCCHHH
AETFIKYADKNLYKAKSLGRNKTVINESSL
HHHHHHHHHCHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MRLSSLEKHIQELNRYLNFHKVCWWIMDIENEPDLFYCNQYMEDVFNLDKSLPYHSVSNT
CCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCC
CPIAGDYLKNVELKSSQQAKLILAEYQDLLNQKTAEYKNQFPYFDPRTNITHYFTSRAKI
CCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHEECCCEEE
LELNDQGEVAIIYGIIEDTTAIVRQYRRIKKQHKMFKELSETDPLTGLGNKRFFMKLLGF
EEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCC
SFDKAQREQTELAVLMIDIDYFKLYNDYYGHLKGDQCLKQVANAIKNSLSRKTDIVARFG
CCCHHHHHHHCEEEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEC
GEEFIIFFTGASAQQTLQLAELIKNNVELCQITHPKSPVSDYVTVSIGAYIKIPSIENYA
CCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEECCEEECCCCCHHH
AETFIKYADKNLYKAKSLGRNKTVINESSL
HHHHHHHHHCHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]