| Definition | Psychromonas ingrahamii 37, complete genome. |
|---|---|
| Accession | NC_008709 |
| Length | 4,559,598 |
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The map label for this gene is bglX [C]
Identifier: 119945772
GI number: 119945772
Start: 2564142
End: 2566928
Strand: Reverse
Name: bglX [C]
Synonym: Ping_2107
Alternate gene names: 119945772
Gene position: 2566928-2564142 (Counterclockwise)
Preceding gene: 119945776
Following gene: 119945770
Centisome position: 56.3
GC content: 46.75
Gene sequence:
>2787_bases ATGCAAACAGAAACAATCAGGATTGCTCAGAAAAATCTTGTCCCGGTCAGCCGACAGGCTGCTGGCGAAGGTATCGTACT GCTGGAAAACAAAAATGCAACGCTGCCTTTGAACAAAGGGGAGACGATTTCGCTGTTTGGTCGCTGCCAAATAGATACTT ATCGCAGTGGTACAGGCTCAGGTGGCGCAGTGAATGTGCCCTATGCGGTGAACGCATTACAAGGACTGCGCGCTAATCCT AGTATTAACATTAATGAAGTGCTGGTGACTATCTATGAAGACTGGATTGCGCAGCATCCCTTTGACGATGGGGGTGGCGG CTGGGCTGCGGAGCCTTGGTTTCAACAAGAGATGCCGCTTGCTGATGAGATAATTAAACAGGCAGCTGCTAATTCAGATA AAGCGCTATTTTTTATTGGCCGCACCGCAGGTGAAGACCAGGATAATGCCGATGCAGCAGGCAGTTATCGACTGACCGAT GCTGAAATTTTAATGCTCGAAAAGGTTAATACCTATTTCGATAAGGTTATTATTGTCCTGAATGTTACCAATATCATGGA TATGTCTTGGCTGGAGTCGATCAAAAACAAGCAATCGATTCAAGCCGTGCTTTATAGTTGGGCGGCTGGAATGGAAGGTG GCCACGCGTTAGCTGATGTTCTTTGCGGTGATATCTCACCCAGCGGCCGTCTGAGTGACACTATCGCTTATCAACTTGCT GATTATCCATCATCGGCTAATTTTGGTCACAAAGATTACAACCTTTACGTTGAAGATATTTATGTCGGATACCGTTATTT TGAAACCTTTAACCCGCAAGCCGTCCAGTACGCCTTTGGAGCGGGTCTTTCATATACGCAGTTTAGCCGCGAACTGGTTT CACATTCGGTAGAGGGCGTCGGGATTAACCAGGTTCTGCAGTTTGATATAAAAGTAGAAAACATTGGAGAGAAATACAGT AGTAAAGAGGTTATCCAAATTTATGTTGAGGCACCGCAGGGGCGTCTTGGCAAACCCGCACGGGTATTAGCAGGCTTTGT CAAATCCACAACACTGAAGCCCGGTGAAGATGAAATCCTGCGCGTCTGCATCGCACTTAAAACCCTTGCTTCCTATGATG ACAGTGGAGTAACAGGACATAGTAACTGCTATGTTGTCGAACCGGGCACTTATCAGTTTTATGTCGGCGCTAGTGTTCGT CACGCACAGCTTATCAGTGCAACATTGCAACTGGAGCAGTTGTTAGTCACAGAAAAACTTACTGAAGCACTGGCACCGGT TAAAGATTTTGAGCGACTAAAACCTGGCGAGCTAGAGGGAAATGGTCTTTATCGGGCAACTTACGAGTCTGTCCCGCAGC GCAGCATTCCGCTCGCTGATAGAATTCAAGCAAACATGCCGAGATCTTTTGCTGTCACAGGGGATCAAGGGATCCGTCTG ACTGACGTAAAAGCAGGGCGCGCTTCCCTGACAGATTTTGTGGCGCAAATGAGTCATGAACAACTTGCGACTATTGTTAG AGGGGAAGGCATGTGCAGCCCTAAGGTTACTCCCGGCACTGCAGCAGCTTTTGGCGGTCTTTCTGACAGCCTGTTTAATT TGGGTATTCCAGTTGCGGCAGCAGCGGACGGTCCATCGGGAATACGTATGGACAGTGGTCATAAAGCCACGCAAGTGCCT ATTGGTACATTACTTGCCTGTACCTGGAACAGTGATCTGAATGAGCAGTTATTCTACCTTATGGGGCAAGAGCTTTATGC CAATCAGATTGATACATTATTAGGCCCGGGTATCAATATTCACCGCCATCCGCTTAATGGCAGAAACTTTGAGTACTTCT CTGAAGATCCTCTGATGACAGGAATCATGGCTGCAGCACAAACCCGCGGGCTTAAAAAGGCGGGCGTATCCGGCACTATC AAGCACTTTGCAAGCAACGATCAAGAGACCGCGCGTGTTGATGTAGATAGCGTAATGTCACAGCGTGCGCTACGTGAAAT CCACCTTAAACCCTTTGAAATGGCAGTTAAAGAGGGCGAGGCTTCAACCCTTATGACCGCTTACAACACTATTAATGGGC ATTGGACCGCCTCTAACTACGATCTTAATACGACGATTTTACGGGGTGAATGGGGCTTTACTGGGATTGTGATGACCGAC TGGTGGGCTAAAATGAACGATCCAATTAAAGCGGGCAAAGAAGATAAAACCCACACCTCTTTTATGATCCGTGCGCAAAA TGATCTTTACATGGTGGTCGAAAATGATGGCGCCGAAGGTAATAGTATGGGAGATGATACGCTTGAAGCATTAGAGAATG GCACCTTGACCGTCGGCGAACTGCAACGCAGTGCCATGAATATCTGCCGCTTTATTATGGAAGCCCCTGTTATGGGACGA CCACTTAAGGCTTATGAGCCAATCAAGACGTTTGCAGCAAAGAGCTATATCTCTAAGGATCTTTCAGCTGTTAATGCGCT TGCCATCGAAGATAGGATCAAACTTAATTGTAAAACCAATACCAGTGTGACAATCGCAGTAACTGAGCCGGGTATCTATC AATGTAGCAGTCTTATTCGTTATGATCGTAATTCACAGGCTCAATCTTCATACAGCCTGCGCCTTAATGGACTCTTTAGT ATGTCTTTTTCAGTTAACGGTACCGATGGCAAGTTGATTACCACTGAAGGGCTGAAGGTGAAACTGGAGAACGGGCATTA CACACTTGATCTGGACTTCGTAAAATCCGGTCTGGAGCTTGAGGGGCTTATTTTTACGAAAGTCTAA
Upstream 100 bases:
>100_bases TTAATTCAGATCATAATTTAATTTTTGCTGCTATTACCCCTCTAACAAAATAGTTTATTAATTTTTATAGATTAACCCTT TTAACGAATTGGACTTACCT
Downstream 100 bases:
>100_bases AAAAACACCGCGCACTCAAATCTGGTAGGGTGCATTCCATGCACCGCTGATAATGTTTGGTGCGCGGAGCACACCCTACG GGTAATGTAATGGTAGGGTG
Product: glycoside hydrolase family 3 protein
Products: NA
Alternate protein names: Beta-D-glucoside glucohydrolase; Cellobiase; Gentiobiase [H]
Number of amino acids: Translated: 928; Mature: 928
Protein sequence:
>928_residues MQTETIRIAQKNLVPVSRQAAGEGIVLLENKNATLPLNKGETISLFGRCQIDTYRSGTGSGGAVNVPYAVNALQGLRANP SININEVLVTIYEDWIAQHPFDDGGGGWAAEPWFQQEMPLADEIIKQAAANSDKALFFIGRTAGEDQDNADAAGSYRLTD AEILMLEKVNTYFDKVIIVLNVTNIMDMSWLESIKNKQSIQAVLYSWAAGMEGGHALADVLCGDISPSGRLSDTIAYQLA DYPSSANFGHKDYNLYVEDIYVGYRYFETFNPQAVQYAFGAGLSYTQFSRELVSHSVEGVGINQVLQFDIKVENIGEKYS SKEVIQIYVEAPQGRLGKPARVLAGFVKSTTLKPGEDEILRVCIALKTLASYDDSGVTGHSNCYVVEPGTYQFYVGASVR HAQLISATLQLEQLLVTEKLTEALAPVKDFERLKPGELEGNGLYRATYESVPQRSIPLADRIQANMPRSFAVTGDQGIRL TDVKAGRASLTDFVAQMSHEQLATIVRGEGMCSPKVTPGTAAAFGGLSDSLFNLGIPVAAAADGPSGIRMDSGHKATQVP IGTLLACTWNSDLNEQLFYLMGQELYANQIDTLLGPGINIHRHPLNGRNFEYFSEDPLMTGIMAAAQTRGLKKAGVSGTI KHFASNDQETARVDVDSVMSQRALREIHLKPFEMAVKEGEASTLMTAYNTINGHWTASNYDLNTTILRGEWGFTGIVMTD WWAKMNDPIKAGKEDKTHTSFMIRAQNDLYMVVENDGAEGNSMGDDTLEALENGTLTVGELQRSAMNICRFIMEAPVMGR PLKAYEPIKTFAAKSYISKDLSAVNALAIEDRIKLNCKTNTSVTIAVTEPGIYQCSSLIRYDRNSQAQSSYSLRLNGLFS MSFSVNGTDGKLITTEGLKVKLENGHYTLDLDFVKSGLELEGLIFTKV
Sequences:
>Translated_928_residues MQTETIRIAQKNLVPVSRQAAGEGIVLLENKNATLPLNKGETISLFGRCQIDTYRSGTGSGGAVNVPYAVNALQGLRANP SININEVLVTIYEDWIAQHPFDDGGGGWAAEPWFQQEMPLADEIIKQAAANSDKALFFIGRTAGEDQDNADAAGSYRLTD AEILMLEKVNTYFDKVIIVLNVTNIMDMSWLESIKNKQSIQAVLYSWAAGMEGGHALADVLCGDISPSGRLSDTIAYQLA DYPSSANFGHKDYNLYVEDIYVGYRYFETFNPQAVQYAFGAGLSYTQFSRELVSHSVEGVGINQVLQFDIKVENIGEKYS SKEVIQIYVEAPQGRLGKPARVLAGFVKSTTLKPGEDEILRVCIALKTLASYDDSGVTGHSNCYVVEPGTYQFYVGASVR HAQLISATLQLEQLLVTEKLTEALAPVKDFERLKPGELEGNGLYRATYESVPQRSIPLADRIQANMPRSFAVTGDQGIRL TDVKAGRASLTDFVAQMSHEQLATIVRGEGMCSPKVTPGTAAAFGGLSDSLFNLGIPVAAAADGPSGIRMDSGHKATQVP IGTLLACTWNSDLNEQLFYLMGQELYANQIDTLLGPGINIHRHPLNGRNFEYFSEDPLMTGIMAAAQTRGLKKAGVSGTI KHFASNDQETARVDVDSVMSQRALREIHLKPFEMAVKEGEASTLMTAYNTINGHWTASNYDLNTTILRGEWGFTGIVMTD WWAKMNDPIKAGKEDKTHTSFMIRAQNDLYMVVENDGAEGNSMGDDTLEALENGTLTVGELQRSAMNICRFIMEAPVMGR PLKAYEPIKTFAAKSYISKDLSAVNALAIEDRIKLNCKTNTSVTIAVTEPGIYQCSSLIRYDRNSQAQSSYSLRLNGLFS MSFSVNGTDGKLITTEGLKVKLENGHYTLDLDFVKSGLELEGLIFTKV >Mature_928_residues MQTETIRIAQKNLVPVSRQAAGEGIVLLENKNATLPLNKGETISLFGRCQIDTYRSGTGSGGAVNVPYAVNALQGLRANP SININEVLVTIYEDWIAQHPFDDGGGGWAAEPWFQQEMPLADEIIKQAAANSDKALFFIGRTAGEDQDNADAAGSYRLTD AEILMLEKVNTYFDKVIIVLNVTNIMDMSWLESIKNKQSIQAVLYSWAAGMEGGHALADVLCGDISPSGRLSDTIAYQLA DYPSSANFGHKDYNLYVEDIYVGYRYFETFNPQAVQYAFGAGLSYTQFSRELVSHSVEGVGINQVLQFDIKVENIGEKYS SKEVIQIYVEAPQGRLGKPARVLAGFVKSTTLKPGEDEILRVCIALKTLASYDDSGVTGHSNCYVVEPGTYQFYVGASVR HAQLISATLQLEQLLVTEKLTEALAPVKDFERLKPGELEGNGLYRATYESVPQRSIPLADRIQANMPRSFAVTGDQGIRL TDVKAGRASLTDFVAQMSHEQLATIVRGEGMCSPKVTPGTAAAFGGLSDSLFNLGIPVAAAADGPSGIRMDSGHKATQVP IGTLLACTWNSDLNEQLFYLMGQELYANQIDTLLGPGINIHRHPLNGRNFEYFSEDPLMTGIMAAAQTRGLKKAGVSGTI KHFASNDQETARVDVDSVMSQRALREIHLKPFEMAVKEGEASTLMTAYNTINGHWTASNYDLNTTILRGEWGFTGIVMTD WWAKMNDPIKAGKEDKTHTSFMIRAQNDLYMVVENDGAEGNSMGDDTLEALENGTLTVGELQRSAMNICRFIMEAPVMGR PLKAYEPIKTFAAKSYISKDLSAVNALAIEDRIKLNCKTNTSVTIAVTEPGIYQCSSLIRYDRNSQAQSSYSLRLNGLFS MSFSVNGTDGKLITTEGLKVKLENGHYTLDLDFVKSGLELEGLIFTKV
Specific function: Unknown
COG id: COG1472
COG function: function code G; Beta-glucosidase-related glycosidases
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 3 family [H]
Homologues:
Organism=Escherichia coli, GI1788453, Length=388, Percent_Identity=29.1237113402062, Blast_Score=116, Evalue=8e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019800 - InterPro: IPR002772 - InterPro: IPR001764 - InterPro: IPR017853 [H]
Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]
EC number: =3.2.1.21 [H]
Molecular weight: Translated: 101452; Mature: 101452
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: PS00775 GLYCOSYL_HYDROL_F3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQTETIRIAQKNLVPVSRQAAGEGIVLLENKNATLPLNKGETISLFGRCQIDTYRSGTGS CCCCEEEEEHHCCCCCCHHCCCCCEEEEECCCCEEECCCCCEEEEEEEEEEEEECCCCCC GGAVNVPYAVNALQGLRANPSININEVLVTIYEDWIAQHPFDDGGGGWAAEPWFQQEMPL CCEEECCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCH ADEIIKQAAANSDKALFFIGRTAGEDQDNADAAGSYRLTDAEILMLEKVNTYFDKVIIVL HHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCEEECCCEEEEEHHHHHHHCEEEEEE NVTNIMDMSWLESIKNKQSIQAVLYSWAAGMEGGHALADVLCGDISPSGRLSDTIAYQLA EECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHEEEEC DYPSSANFGHKDYNLYVEDIYVGYRYFETFNPQAVQYAFGAGLSYTQFSRELVSHSVEGV CCCCCCCCCCCCCEEEEEEEEEEEEEEECCCCCCEEHHHCCCCCHHHHHHHHHHHCCCCC GINQVLQFDIKVENIGEKYSSKEVIQIYVEAPQGRLGKPARVLAGFVKSTTLKPGEDEIL CCCCEEEEEEEEEHHCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH RVCIALKTLASYDDSGVTGHSNCYVVEPGTYQFYVGASVRHAQLISATLQLEQLLVTEKL HHHHHHHHHHCCCCCCCCCCCCEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHH TEALAPVKDFERLKPGELEGNGLYRATYESVPQRSIPLADRIQANMPRSFAVTGDQGIRL HHHHCCHHHHHHCCCCCCCCCCEEEEHHHHCCCCCCCHHHHHHCCCCCEEEEECCCCEEE TDVKAGRASLTDFVAQMSHEQLATIVRGEGMCSPKVTPGTAAAFGGLSDSLFNLGIPVAA EECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCHHHHHCCCCEEE AADGPSGIRMDSGHKATQVPIGTLLACTWNSDLNEQLFYLMGQELYANQIDTLLGPGINI ECCCCCCCEECCCCCEEECCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE HRHPLNGRNFEYFSEDPLMTGIMAAAQTRGLKKAGVSGTIKHFASNDQETARVDVDSVMS EECCCCCCCCCEECCCCHHHHHHHHHHHCCCHHCCCCHHHHHHCCCCCCCEEECHHHHHH QRALREIHLKPFEMAVKEGEASTLMTAYNTINGHWTASNYDLNTTILRGEWGFTGIVMTD HHHHHHHCCCHHHHHHHCCCCCEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEEEEC WWAKMNDPIKAGKEDKTHTSFMIRAQNDLYMVVENDGAEGNSMGDDTLEALENGTLTVGE HHHHCCCCHHCCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHCCCEEHHH LQRSAMNICRFIMEAPVMGRPLKAYEPIKTFAAKSYISKDLSAVNALAIEDRIKLNCKTN HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECEEEEEEECC TSVTIAVTEPGIYQCSSLIRYDRNSQAQSSYSLRLNGLFSMSFSVNGTDGKLITTEGLKV CEEEEEEECCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCEEEECCEEE KLENGHYTLDLDFVKSGLELEGLIFTKV EECCCCEEEEHHHHHCCCCCCEEEEECC >Mature Secondary Structure MQTETIRIAQKNLVPVSRQAAGEGIVLLENKNATLPLNKGETISLFGRCQIDTYRSGTGS CCCCEEEEEHHCCCCCCHHCCCCCEEEEECCCCEEECCCCCEEEEEEEEEEEEECCCCCC GGAVNVPYAVNALQGLRANPSININEVLVTIYEDWIAQHPFDDGGGGWAAEPWFQQEMPL CCEEECCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCH ADEIIKQAAANSDKALFFIGRTAGEDQDNADAAGSYRLTDAEILMLEKVNTYFDKVIIVL HHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCEEECCCEEEEEHHHHHHHCEEEEEE NVTNIMDMSWLESIKNKQSIQAVLYSWAAGMEGGHALADVLCGDISPSGRLSDTIAYQLA EECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHEEEEC DYPSSANFGHKDYNLYVEDIYVGYRYFETFNPQAVQYAFGAGLSYTQFSRELVSHSVEGV CCCCCCCCCCCCCEEEEEEEEEEEEEEECCCCCCEEHHHCCCCCHHHHHHHHHHHCCCCC GINQVLQFDIKVENIGEKYSSKEVIQIYVEAPQGRLGKPARVLAGFVKSTTLKPGEDEIL CCCCEEEEEEEEEHHCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHH RVCIALKTLASYDDSGVTGHSNCYVVEPGTYQFYVGASVRHAQLISATLQLEQLLVTEKL HHHHHHHHHHCCCCCCCCCCCCEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHH TEALAPVKDFERLKPGELEGNGLYRATYESVPQRSIPLADRIQANMPRSFAVTGDQGIRL HHHHCCHHHHHHCCCCCCCCCCEEEEHHHHCCCCCCCHHHHHHCCCCCEEEEECCCCEEE TDVKAGRASLTDFVAQMSHEQLATIVRGEGMCSPKVTPGTAAAFGGLSDSLFNLGIPVAA EECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCHHHHHCCCCEEE AADGPSGIRMDSGHKATQVPIGTLLACTWNSDLNEQLFYLMGQELYANQIDTLLGPGINI ECCCCCCCEECCCCCEEECCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE HRHPLNGRNFEYFSEDPLMTGIMAAAQTRGLKKAGVSGTIKHFASNDQETARVDVDSVMS EECCCCCCCCCEECCCCHHHHHHHHHHHCCCHHCCCCHHHHHHCCCCCCCEEECHHHHHH QRALREIHLKPFEMAVKEGEASTLMTAYNTINGHWTASNYDLNTTILRGEWGFTGIVMTD HHHHHHHCCCHHHHHHHCCCCCEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEEEEC WWAKMNDPIKAGKEDKTHTSFMIRAQNDLYMVVENDGAEGNSMGDDTLEALENGTLTVGE HHHHCCCCHHCCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHCCCEEHHH LQRSAMNICRFIMEAPVMGRPLKAYEPIKTFAAKSYISKDLSAVNALAIEDRIKLNCKTN HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECEEEEEEECC TSVTIAVTEPGIYQCSSLIRYDRNSQAQSSYSLRLNGLFSMSFSVNGTDGKLITTEGLKV CEEEEEEECCCHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEEEEECCCCCEEEECCEEE KLENGHYTLDLDFVKSGLELEGLIFTKV EECCCCEEEEHHHHHCCCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2106673 [H]